Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d20
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.5  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 162 VTELRHRKEPHLPRPNPAASLVIKTSP 82
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 162 VTELRHRKEPHLPRPNPAASLVIKTSP 82
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 162 VTELRHRKEPHLPRPNPAASLVIKTSP 82
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 250 GRFPVQSLTESHL 288
           GRFP QSLT+  L
Sbjct: 343 GRFPPQSLTDMWL 355


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 501 QQVFW*VHPGAHRGCPSAPA 560
           QQ+F   +PG  + C ++PA
Sbjct: 16  QQLFSSANPGTIQACTTSPA 35


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 250 GRFPVQSLTESHL 288
           GRFP QSLT+  L
Sbjct: 311 GRFPPQSLTDMWL 323


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 198 YKITEKPHVQRSVTELRHRKEPH 130
           Y + E+P  ++++ ELR  KE +
Sbjct: 155 YALGEQPLTEQNLEELRDLKETY 177


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 198 YKITEKPHVQRSVTELRHRKEPH 130
           Y + E+P  ++++ ELR  KE +
Sbjct: 193 YALGEQPLTEQNLEELRDLKETY 215


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 232 ITGQFRGRFP 261
           + GQFRG FP
Sbjct: 54  LDGQFRGEFP 63


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 232 ITGQFRGRFP 261
           + GQFRG FP
Sbjct: 28  LDGQFRGEFP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,370
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)