Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d19
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.3  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   9.3  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 461 ASIRCWRAGNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYN 333
           +S+   R+ ++    L++VP   S L NI +R+ + PPS   N
Sbjct: 556 SSLNGQRSNSSVQRALSSVPNYSSSLSNISTRNLNIPPSNANN 598


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 547 TSSAHAPSASGTTRH*REATLYAASLSSQRRFDAGGRETRE 425
           +SS HAPS  G  +H      Y  S  SQ+ F   GR TR+
Sbjct: 252 SSSGHAPSQQGGNKH-----SYKKS-DSQQSFHHKGRNTRK 286


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 228  LFPKHFSLLYNYTSLVELEFYFEIY 302
            ++  H SLL+++  +VEL+  F IY
Sbjct: 2701 VYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 472 LSSQRRFDAGGRETREALCLQMCLE 398
           +SS RRF   G   RE  C + C+E
Sbjct: 465 MSSHRRFPDWGDYQREVTCCRNCVE 489


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 291 NKILALLTMYSCIIS*SAWGIVFGNSFY*LLNIYKFYTFVYRE-NICTF 148
           N ++  L   S I+  S+W  V   SF+ L  I  F TF+ R    C F
Sbjct: 75  NALVTGLATSSGILLYSSWASVMQESFHFLEKISMFDTFLVRVFQFCAF 123


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 741 WGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQE 640
           W L    +H        AI+QS+ E +MD D+ E
Sbjct: 738 WSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,058
Number of Sequences: 5004
Number of extensions: 49758
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)