Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d19
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     29   3.2  
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    29   5.5  
02_02_0707 + 13144147-13144788,13145115-13148663                       28   9.6  

>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 445 GGRETREALCLQMCLESALDYITSARDRTA 356
           GGR       L+  LES L+++T+ARDR A
Sbjct: 44  GGRWAPPDQVLENVLESVLEFLTAARDRNA 73


>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 633 FSLPACRCPFVVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGAP 770
           + +P  +     HG  G L A   G+++ G P  SP    S PG+P
Sbjct: 617 YGMPLGKSTTSNHGYYGNL-AFGMGMAYPGSPLGSPVASPSGPGSP 661


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 468 LSEAAYNVASRQCRVVPEAEGACAELVGSR 557
           LSE  Y++   + R +PE    C+E+  SR
Sbjct: 682 LSELYYSICRNEIRTIPEQGAGCSEMSFSR 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,581,544
Number of Sequences: 37544
Number of extensions: 342807
Number of successful extensions: 1085
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)