Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d19
         (782 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030281-1|ABN49420.1|  140|Drosophila melanogaster IP18534p pro...    30   3.1  
AY118634-1|AAM50003.1|  601|Drosophila melanogaster RH60839p pro...    29   9.5  
AE014298-1040|AAF46260.2|  601|Drosophila melanogaster CG9657-PA...    29   9.5  

>BT030281-1|ABN49420.1|  140|Drosophila melanogaster IP18534p
           protein.
          Length = 140

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  YVFVLYVCGRFKLLFFKFY*QMYIYFHDKRMYKIYK 194
           +V V+Y+CG   L FF      +I+F D RM  +YK
Sbjct: 98  FVIVIYLCGLCSLGFFLSI--YHIFFWDSRMPPVYK 131


>AY118634-1|AAM50003.1|  601|Drosophila melanogaster RH60839p
           protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 99  LYVCGRFKLLFFKFY*QMYIYFHDKRMYKIYKYLTINKNYSQTLF 233
           +Y+ G   L+ F  Y      FH+  +   YKYL    N S  LF
Sbjct: 102 MYIMGSLVLMGFCMYYFFLPVFHELNLISTYKYLEQRYNRSLRLF 146


>AE014298-1040|AAF46260.2|  601|Drosophila melanogaster CG9657-PA
           protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 99  LYVCGRFKLLFFKFY*QMYIYFHDKRMYKIYKYLTINKNYSQTLF 233
           +Y+ G   L+ F  Y      FH+  +   YKYL    N S  LF
Sbjct: 102 MYIMGSLVLMGFCMYYFFLPVFHELNLISTYKYLEQRYNRSLRLF 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,196,031
Number of Sequences: 53049
Number of extensions: 597729
Number of successful extensions: 2372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)