Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d19
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.6  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     28   6.6  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     28   6.6  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.7  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    28   8.7  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    28   8.7  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    28   8.7  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    28   8.7  

>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 540 QRTLLLPQEQHDIDERPHYMQPRSVRSVDSML 445
           Q T   P+ Q+DIDE  H++  +SV  V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579


>Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical
           protein F32A11.6 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 437 GNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYNLKHL 321
           G+A S V ++     S  ++ GS S SGPPSP   L  L
Sbjct: 22  GSADSGVFSSGVHASSPSHSQGSSSQSGPPSPTTQLNSL 60


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 705 GVSHAGRPGS-SPTGDSSAPGAP 770
           G S +G+PG   P GD+ APGAP
Sbjct: 258 GQSGSGQPGGPGPQGDAGAPGAP 280


>U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical
           protein F46F11.8 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 434 NA*SAVLANVPRV-CSRLYNIGSRSHSGPPSPI 339
           NA  +V  N+ R+ CSR YNI  R HS PPS I
Sbjct: 295 NAKLSVFPNLDRLYCSR-YNIPYRRHSLPPSTI 326


>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 111 GRFKLLFFKFY*QMYIYFHDKRMYKIYKYLTIN 209
           G F   FF F       FH KR +  YKYL +N
Sbjct: 21  GFFSNAFFGFILVYLTLFHIKRQFGSYKYLLVN 53


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           +SG +  G PG  P GD+ APGAP
Sbjct: 263 QSGSAQPGGPG--PQGDAGAPGAP 284


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           ++G S  G PG  P GD+ APGAP
Sbjct: 262 QAGSSQPGGPG--PQGDAGAPGAP 283


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           ++G S  G PG  P GD+ APGAP
Sbjct: 262 QAGSSQPGGPG--PQGDAGAPGAP 283


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           ++G S  G PG  P GD+ APGAP
Sbjct: 262 QAGSSQPGGPG--PQGDAGAPGAP 283


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           ++G S  G PG  P GD+ APGAP
Sbjct: 262 QAGSSQPGGPG--PQGDAGAPGAP 283


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 717 AGRPGS-SPTGDSSAPGAP 770
           AG PG+  P GD+ APGAP
Sbjct: 158 AGAPGAPGPQGDAGAPGAP 176


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 702 SGVSHAGRPG-SSPTGDSSAPGAP 770
           SG   AG PG + P G+  APGAP
Sbjct: 180 SGPGPAGPPGPAGPAGNDGAPGAP 203


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 702 SGVSHAGRPG-SSPTGDSSAPGAP 770
           SG   AG PG + P G+  APGAP
Sbjct: 180 SGPGPAGPPGPAGPAGNDGAPGAP 203


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 702 SGVSHAGRPG-SSPTGDSSAPGAP 770
           SG   AG PG + P G+  APGAP
Sbjct: 180 SGPGPAGPPGPAGPAGNDGAPGAP 203


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 702 SGVSHAGRPG-SSPTGDSSAPGAP 770
           SG   AG PG + P G+  APGAP
Sbjct: 180 SGPGPAGPPGPAGPAGNDGAPGAP 203


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 699 RSGVSHAGRPGSSPTGDSSAPGAP 770
           ++G +  G+PG  P GD+ APGAP
Sbjct: 260 QAGHAQPGQPG--PQGDAGAPGAP 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,064
Number of Sequences: 27780
Number of extensions: 300941
Number of successful extensions: 1044
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)