Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d18
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   4.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.2  

>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +2

Query: 425 LSN*NLFFFVHCIVY-NMSNGVNIEL 499
           +S+ N++FF  C+V+  + NG+N+++
Sbjct: 50  ISSLNVYFFTPCLVFEKVGNGLNLKM 75


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 295  IDTQTKKRTCSSHECFP-DMR--IEPTTLGSTVRGLLMHPNKIVY 420
            +D  +  R C   E F  D +   +  +LG  + G+  HP K+VY
Sbjct: 995  VDENSFIRICKFQEDFEYDNKWPYKKVSLGKQINGIAYHPTKMVY 1039


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,417
Number of Sequences: 5004
Number of extensions: 53651
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)