Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d17
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   112   4e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.4  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.1  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  112 bits (270), Expect = 4e-26
 Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
 Frame = -3

Query: 489 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSD 310
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 309 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPS 145
           F       + FDSY++P  +++    R L+VD              +T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 144 LGIKVDANPGRLNQTNFFINRPGIFFGQCSEICG 43
           LGIK D  P RLNQ +  I+R G+F+GQCSE+CG
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCG 222


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 74  FFLVNVQKFVELIHSFIPYCKLKV 3
           F+LV+ +++  L+H F+ Y  L +
Sbjct: 823 FYLVDTEQYASLLHDFLEYQSLLI 846


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 203 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 316
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,527
Number of Sequences: 5004
Number of extensions: 32884
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)