Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d16
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 250 2e-67
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 215 4e-57
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 190 1e-49
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 182 6e-47
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 152 4e-38
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 127 2e-30
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 115 8e-27
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 89 8e-19
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 64 1e-11
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo... 30 0.39
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.1
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 2.8
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 27 3.7
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.4
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 8.5
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 8.5
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 8.5
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 250 bits (612), Expect = 2e-67
Identities = 115/156 (73%), Positives = 126/156 (80%)
Frame = -3
Query: 529 YFDVTADGEPLGRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGD 350
+FDV A+G+PLGRIV KL D VPKTA NFRALCTGEKG+GY GS+FHR+IP FM QGGD
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 349 FTNHNGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKH 170
FT NGTGGKSIYG F DENF LKH PG+LSMANAGPNTNGSQFFITTV TPWLD KH
Sbjct: 65 FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124
Query: 169 VVFGSVVEGMDVVQKMEKLGSKSGKPIKKVVISDSG 62
VVFG V EGMDVV+K+E LGS SG ++VI G
Sbjct: 125 VVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 215 bits (526), Expect = 4e-57
Identities = 103/163 (63%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Frame = -3
Query: 532 VYFDVTADGEPLGRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGG 353
VYFD+ E LGR+ I L VPKTAENFRAL TGEKGFGY+GS FHR+IP+FM QGG
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGG 88
Query: 352 DFTNHNGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRK 173
D T +GTGGKSIYG F DENFKL H PG+LSMANAGP++NGSQFFITTV TPWLD
Sbjct: 89 DITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGH 148
Query: 172 HVVFGSVVEGMDVVQKMEKLGSKS-GKPIKKVVISDSGDYHEE 47
HVVFG V+ G D+V+K+ K + + KP++ V I SG +E
Sbjct: 149 HVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQLSQE 191
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 190 bits (464), Expect = 1e-49
Identities = 92/160 (57%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Frame = -3
Query: 529 YFDVTADGEPLGRIVIKLNTDEVPKTAENFRALCTGEKGFG----YKGSSFHRIIPDFMC 362
YF ++ DG+ I +L + VPKT +NF +LC G + G YKGS FHR+I +FM
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 361 QGGDFTNHNGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWL 182
QGGDFT NGTGG+SIYG F DENF+LKH P +LSMANAGPNTNGSQFFITTVPTP L
Sbjct: 66 QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125
Query: 181 DRKHVVFGSVVEGMDVVQKMEKLGSKSGKPIKKVVISDSG 62
D KHVVFG V++G V+ +E L +K+ P+ VVI + G
Sbjct: 126 DGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 182 bits (442), Expect = 6e-47
Identities = 96/174 (55%), Positives = 120/174 (68%), Gaps = 9/174 (5%)
Frame = -3
Query: 553 STQPDKQVYFDVTADGEPLGRIVIKLNTDEVPKTAENFRALCTGE------KGFGYKGSS 392
ST+P V+ D+ DG LGRI I+L + VPKTAENFR CTGE K GYK S+
Sbjct: 2 STEP--VVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNST 59
Query: 391 FHRIIPDFMCQGGDFTNHNGTGGKSIYG-RTFSDENFKLKHTGPGILSMANAGPNTNGSQ 215
FHRII FM QGGDF + +GTG +I+ RTF DENF LKH PG+LSMANAG ++NG Q
Sbjct: 60 FHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQ 119
Query: 214 FFITTVPTPWLDRKHVVFGSVVEGMDVVQKMEK--LGSKSGKPIKKVVISDSGD 59
FFITTVP +LD KHVVFG V+EG D+V+++E +G+ S +P V I + G+
Sbjct: 120 FFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGE 172
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 152 bits (369), Expect = 4e-38
Identities = 79/144 (54%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Frame = -3
Query: 499 LGRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGK 320
LG+I+I+L T+ PKT +NF L ++G+ Y G FHR+IPDF+ QGGD T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 319 SIYGRTFSDE-NFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGSVVEG 143
SIYG F DE + L HTG GILSMANAGPNTN SQFFIT PTPWLD KH +FG VV G
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 142 MDVVQKMEKLGS-KSGKPIKKVVI 74
+ V ++M + + S +PI+ + I
Sbjct: 126 LSVCKRMGLIRTDSSDRPIEPLKI 149
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 127 bits (306), Expect = 2e-30
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Frame = -3
Query: 496 GRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKS 317
G I IKL +E PK +NF E G+ Y + FHRII +FM QGGD +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 316 IYGRTFSDE-NFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGSVVEGM 140
I+ + F DE + LKH P +SMAN+GPNTNGSQFFITT TPWLD KH +F G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 139 DVVQKMEK 116
DVV ++E+
Sbjct: 580 DVVHRIEQ 587
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 115 bits (276), Expect = 8e-27
Identities = 64/133 (48%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = -3
Query: 496 GRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKS 317
G I I+L+TD P NF L ++G+ Y+ + FHR I FM QGGD + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 316 IYGRTFSDENFK-LKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGSVVEGM 140
I+G+ F DE LKH GI+SMAN G NTNGSQFFI P LD KH +FG VV G+
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400
Query: 139 DVVQKMEKLGSKS 101
+V+ +EK+ + S
Sbjct: 401 NVLDALEKVPTNS 413
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 88.6 bits (210), Expect = 8e-19
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Frame = -3
Query: 496 GRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKS 317
G I I+L EVPK NF LC +G+ Y G+ HR++P+F+ QGGD T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 316 IYGRTFSDENF-KLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGSVV 149
IYG F+ E +L+ G++ MA N SQFFIT PTP + K +FG VV
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 64.5 bits (150), Expect = 1e-11
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Frame = -3
Query: 499 LGRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGK 320
+G +VI L E PKT ENF LC K Y F+ I ++ CQ GD G GG+
Sbjct: 9 VGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGR 65
Query: 319 SIYG------RTFSDE-NFKLKHTGPGILSMANAGPNTN-------GSQFFITTVPT-PW 185
++ R F E N L H G++SM+ A ++ GSQF IT
Sbjct: 66 CVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEG 125
Query: 184 LDRKHVVFGSVVEGMDVVQKM-EKLGSKSGKPIKKVVI 74
LD ++ ++G V EG D + K+ + + + G+P + + I
Sbjct: 126 LDERYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRI 163
>SPBC83.06c |||mitochondrial ribosomal protein subunit
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 59
Score = 29.9 bits (64), Expect = 0.39
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 692 SKVYIVKYTGRIYLVCDENPNHDT 621
S Y V+ GR+Y++C ++P H T
Sbjct: 33 SSCYFVRRKGRLYVLCKKHPRHKT 56
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 487 LYVPMALRQQLHRNKLVYQVESKQNEVLQQSI 582
LYV +A R+++ R++L Q++++ LQQ +
Sbjct: 434 LYVALAQRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 136 HPYLQPQTQILHVFYPTKESELWL*KIETHLYS 234
HP +P T +L+ +P +++ L K++TH+ S
Sbjct: 391 HPPPKPNTGVLNPTFPPEKAPASLEKVDTHVTS 423
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 142 MDVVQKMEKLGSKSGKPIKK 83
M+ +QKM+ L +K G+P KK
Sbjct: 1 MEPIQKMDSLNNKEGQPDKK 20
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 MTTFFIGL-PLLEPSFSIFCTTSIPSTTDPNTTCFLSNQGVGTVVIK 212
+ TF G PL+EP+F+ + + PN T Q VG + +K
Sbjct: 248 VATFTSGYSPLVEPAFTFASALNTTLNSFPNGTLPTQTQVVGDIGVK 294
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 407 PKTFFTSTQSSKV--LSSFRYFIRVQFYDYTSQWL 505
P FF + +++ L S R F+ FYD+T+++L
Sbjct: 16 PSQFFAGSSLNRLSFLRSNREFLNKAFYDHTTRFL 50
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 452 SFRYFIRVQFYDYTSQWLSVSSYIEI-NLFIRLSRSK 559
+ RY +R+ + T+ W S SY EI +LF R K
Sbjct: 363 AIRYGLRMSPKEITTSWGSPKSYSEIGDLFARYCEKK 399
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 457 KTAENFRALCTGEKGFGYKGSSFHRIIP 374
K A F A+C EKG Y +FH +P
Sbjct: 414 KQALIFDAICLLEKGITYSQHNFHLKLP 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,811
Number of Sequences: 5004
Number of extensions: 71837
Number of successful extensions: 221
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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