Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d12
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    28   0.46 
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   4.3  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 313 AIAGPALINPSRTXRPTFSIFLKS 384
           AIA P +I+P  + RP  S+F+KS
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKS 225


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 LMLFRXDLRSFKLEIHNYLQYCFKLNASLXLYHEVYFPKD 294
           ++ FR  +   KL   ++  YC+K N  +  +H+V    D
Sbjct: 8   ILQFRSKITG-KLNTPDFRVYCYKNNKPISFFHDVPLTSD 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,442
Number of Sequences: 5004
Number of extensions: 16956
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)