Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d12
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799...    29   1.8  
06_01_0610 - 4415080-4415461,4415872-4416851                           27   4.1  
01_02_0026 - 10314159-10314413,10315263-10315341,10316347-10316585     27   4.1  

>06_01_1023 -
           7996240-7996369,7997166-7997260,7997430-7997515,
           7998034-7998184
          Length = 153

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 FPKDFACPMTAIAGPALINPSRTXRPTFSIFLKSFHLG 396
           F +DFA P+ A  GP   +P     P  SI++K+ + G
Sbjct: 61  FARDFAAPVHAGLGPK-TSPKDAPLPHLSIYIKNIYKG 97


>06_01_0610 - 4415080-4415461,4415872-4416851
          Length = 453

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 103 WYVKYY*YNRGT 138
           WY+ YY YNRGT
Sbjct: 435 WYLSYYGYNRGT 446


>01_02_0026 - 10314159-10314413,10315263-10315341,10316347-10316585
          Length = 190

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 334 INPSRTXRPTFSIFLKSFHLGS 399
           +  SR  +PT ++FLK+FHL S
Sbjct: 74  LRSSRGGKPTPTLFLKNFHLAS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,047,868
Number of Sequences: 37544
Number of extensions: 93368
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)