Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d12
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical
           protein C17G1.6a protein.
          Length = 765

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 EVYFPKDFACPMTAIAGPALINPS 345
           E+Y P  F  P ++ A PAL+ PS
Sbjct: 518 ELYDPSTFLSPSSSSASPALLLPS 541


>AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.1 protein.
          Length = 551

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 LQYCFKLNASLXLYHEVYFPKDF 297
           + +CF       LYH+V FP D+
Sbjct: 133 MMWCFSYFLIALLYHKVLFPNDY 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,343,025
Number of Sequences: 27780
Number of extensions: 90278
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)