Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d11
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1521 + 27650357-27651064                                         28   2.2  
08_02_1532 + 27675824-27676531                                         27   3.8  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    27   6.6  
08_02_1526 + 27662697-27663401                                         26   8.7  
08_02_1520 + 27648697-27649404                                         26   8.7  
08_02_1519 + 27646256-27646960                                         26   8.7  

>08_02_1521 + 27650357-27651064
          Length = 235

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 352 LKLCNAMDDFYSEFKNV---LQVSFPETDGFSFQ 260
           L LCNAM++ ++E K +   LQVS  + DG   Q
Sbjct: 84  LDLCNAMNEVFTELKAIIQDLQVSLRKGDGAVLQ 117


>08_02_1532 + 27675824-27676531
          Length = 235

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 352 LKLCNAMDDFYSEFKNVLQ 296
           L LCNAM++ ++E K+++Q
Sbjct: 84  LDLCNAMNEVFTELKSIIQ 102


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 358 VTLKLCNAMDDFYSEFKNVLQVSFPETDGFSF 263
           V+   C   DDFY   ++  ++SF  +D F +
Sbjct: 277 VSCDTCKVSDDFYHVSRDTREISFQVSDDFYY 308


>08_02_1526 + 27662697-27663401
          Length = 234

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 352 LKLCNAMDDFYSEFKNVLQ 296
           L LCNAM++ ++E K ++Q
Sbjct: 84  LDLCNAMNEVFTELKAIIQ 102


>08_02_1520 + 27648697-27649404
          Length = 235

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 352 LKLCNAMDDFYSEFKNVLQ 296
           L LCNAM++ ++E K ++Q
Sbjct: 84  LDLCNAMNEVFTELKAIIQ 102


>08_02_1519 + 27646256-27646960
          Length = 234

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 352 LKLCNAMDDFYSEFKNVLQ 296
           L LCNAM++ ++E K ++Q
Sbjct: 84  LDLCNAMNEVFTELKAIIQ 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,006,770
Number of Sequences: 37544
Number of extensions: 99291
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)