Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d11
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   3.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   8.5  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 209 FQFCYPTSRVRCNENNILKRKPICFGKRNL*DIFKFTIEIVHC 337
           F   Y TS V  ++ + L   P  FG     DI  F  +  HC
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHC 125


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 379 LASTYTAVTLKLCNAMDDFYSEFKN 305
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 379 LASTYTAVTLKLCNAMDDFYSEFKN 305
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 306 FLNSL*KSSIALH 344
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,587
Number of Sequences: 438
Number of extensions: 1729
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)