Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d09
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.8  

>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1079

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 444  IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSXRLRSIADVVL 295
            +D+  E    Q  +  FSA V YHL D     QK++L   R  S +DV +
Sbjct: 894  VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 264 KPSRSNPGRLARFMVAISDRXAVWIENAV 178
           KP+RS   RL    V   D   +WI N V
Sbjct: 167 KPARSKHCRLCNICVEKFDHHCIWINNCV 195


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 444 IDKQKELQQRQKWLVNFSAQVAYH 373
           +D++KEL  R+ WL +FS  +  H
Sbjct: 389 LDQEKELSLRKSWLSHFSNLLFNH 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,901
Number of Sequences: 5004
Number of extensions: 42340
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)