Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d09
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0661 - 26009838-26010950,26011302-26011802                       30   2.0  
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458...    28   7.9  

>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 675 RNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALE 553
           R ++ VE++A   AR LR  W+E+ AIL  E    +++ALE
Sbjct: 493 RQLQAVELVAHTAARCLRLQWEERPAIL--EVVANLETALE 531


>03_04_0204 -
           18444903-18445054,18445445-18445676,18445765-18445836,
           18446201-18446347,18446559-18446614,18446727-18446832,
           18446938-18447025,18447112-18447230,18448975-18449580,
           18449803-18449898,18450232-18450422,18453287-18453416,
           18453531-18453566
          Length = 676

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 596 FCLPKEETRLKAL*KKIIFLVPSKLNSIFXR*XNLRNVGRDQVER 462
           F  PKEE+R+    + ++ L   KL     R  NL+++G D VER
Sbjct: 429 FSAPKEESRVSEAARMVVQLEEEKLILQKVRKCNLKSIGSD-VER 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,366
Number of Sequences: 37544
Number of extensions: 275293
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)