Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d09
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein.               30   6.6  
BC065223-1|AAH65223.1| 1136|Homo sapiens histocompatibility (min...    30   6.6  
BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein.        30   6.6  
AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibilit...    30   6.6  
AC004151-1|AAC03237.1|  996|Homo sapiens D1013901 protein.             30   6.6  

>D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein.
          Length = 1165

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 519 QYFXALXESSXRWSGPGGTXNRXELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 340
           ++  A  E     S PG      + +DK++ L++  K      A   Y  C   AK QK+
Sbjct: 449 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 507

Query: 339 MLVSXR---LRSIADVV 298
            L   +   LR I +V+
Sbjct: 508 ELEDTKVTALRQIQEVI 524


>BC065223-1|AAH65223.1| 1136|Homo sapiens histocompatibility (minor)
           HA-1 protein.
          Length = 1136

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 519 QYFXALXESSXRWSGPGGTXNRXELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 340
           ++  A  E     S PG      + +DK++ L++  K      A   Y  C   AK QK+
Sbjct: 420 RFLVAKAEEEQAGSAPGAGGTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 478

Query: 339 MLVSXR---LRSIADVV 298
            L   +   LR I +V+
Sbjct: 479 ELEDTKVTALRQIQEVI 495


>BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein.
          Length = 1131

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 519 QYFXALXESSXRWSGPGGTXNRXELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 340
           ++  A  E     S PG      + +DK++ L++  K      A   Y  C   AK QK+
Sbjct: 415 RFLVAKAEEEQAGSAPGAGGTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 473

Query: 339 MLVSXR---LRSIADVV 298
            L   +   LR I +V+
Sbjct: 474 ELEDTKVTALRQIQEVI 490


>AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibility
           antigen HA-1 protein.
          Length = 1136

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 519 QYFXALXESSXRWSGPGGTXNRXELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 340
           ++  A  E     S PG      + +DK++ L++  K      A   Y  C   AK QK+
Sbjct: 420 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 478

Query: 339 MLVSXR---LRSIADVV 298
            L   +   LR I +V+
Sbjct: 479 ELEDTKVTALRQIQEVI 495


>AC004151-1|AAC03237.1|  996|Homo sapiens D1013901 protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 519 QYFXALXESSXRWSGPGGTXNRXELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 340
           ++  A  E     S PG      + +DK++ L++  K      A   Y  C   AK QK+
Sbjct: 280 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 338

Query: 339 MLVSXR---LRSIADVV 298
            L   +   LR I +V+
Sbjct: 339 ELEDTKVTALRQIQEVI 355


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,702,648
Number of Sequences: 237096
Number of extensions: 1585355
Number of successful extensions: 3455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3455
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)