Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d09
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    29   4.0  
Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 1   YNIXL*YFVIFKCXSNFDLIFFQYLSLISIHLKERLLSIKSHV 129
           YN+ + +FVIFK  + F  + F  ++L ++ +K+ L  ++  +
Sbjct: 184 YNVYMTFFVIFKMVATF--LVFSMIALATLDMKKMLNEVRRSI 224


>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 355 KRTKRDASIXQVEKHR*RCAGESR*NIGRTETISVESRTSSK 230
           K T+R   + + EK + + A   +     T+T+S+E RTSS+
Sbjct: 86  KATRRKERVVEKEKEQPKTATIRKKKQSATQTVSIEHRTSSE 127


>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 427 ASATTEMAG*FQRTGGIPLV*LHSKRTKRDASIXQVE-KHR*RCAGESR 284
           +S   EMA  F++TGG  L     KRTK D    +VE KH  +  G++R
Sbjct: 2   SSTAEEMAAAFEQTGGPDLTTGSGKRTKSD----RVEHKHASQPGGDTR 46


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 606 FRPIKSAGDEPLAVPTFPPAP 668
           F+P+ + GD PL  PT  P+P
Sbjct: 861 FQPLFNTGDAPLLYPTAAPSP 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,041
Number of Sequences: 27780
Number of extensions: 244180
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)