Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d06
(221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 2.4
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 23 4.1
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 23 4.1
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 23 5.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 23 5.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 23 7.2
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 23 7.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 23 7.2
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 22 9.5
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 22 9.5
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 22 9.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 151 PVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIA 35
PV P G PPP P PK P + P P S A
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPK--PSVGVPPVPPPSTA 1216
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -2
Query: 151 PVVCPKDGCKQTPPPKLTDPCP 86
PV P G PPP P P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 151 PVVCPKDGCKQTPPPKLTDP 92
P+V P KQTP +T+P
Sbjct: 100 PIVSPTTSPKQTPSINVTEP 119
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -2
Query: 175 ELKREKKQPV---VCPKDGCKQTPPPKLTDPCPK 83
E K++KKQ +C K+ CK+ P +D K
Sbjct: 300 EEKQDKKQSTNRDLCRKESCKKEPSLSSSDQVTK 333
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 48 FGRIGKFRHGFP 83
F RI +F+HGFP
Sbjct: 539 FERIEEFKHGFP 550
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = -2
Query: 190 IPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFS 41
IP T+L + P+V P D + P +P +F P S
Sbjct: 144 IPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSSPLKDFQSSPPLS 193
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 181 WTELKREKKQPVVCPKDG 128
WT LK +K +VC +G
Sbjct: 258 WTPLKGQKMHYIVCDTNG 275
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 185 VVDRIEEGEEAACRLS*RWLQADATSQTNRPVPQRKSMPELSNS 54
+ D + G+ + S ++ DAT + +RPVP + LS S
Sbjct: 234 ISDYVLHGDGISGAASDSEIEEDATVEIDRPVPTKTEENLLSAS 277
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 175 ELKREKKQPVVCPKDGCKQTP---PPKLTDPCPKGNPCLNFP 59
E+K EKK+P + ++G T P +D KG+ + P
Sbjct: 214 EIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQP 255
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -1
Query: 191 DTVVDRIEEGEEAACRLS*RWLQADATSQTNRPVPQR 81
DT+ E G+ A + W+ SQ + P P++
Sbjct: 318 DTINTARESGDTACLNFALAWMFEFKRSQYSNPSPEK 354
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 122 ADATSQTNRPVPQRKSMPELSNSTELFD 39
ADA SQ +PVP K+ S T L+D
Sbjct: 306 ADAKSQLTQPVPFAKACG--SGKTLLYD 331
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly
protein Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 73 CLNFPIRPNFSIASLFYHVLFGSI 2
CLN P+RP F ++ ++G +
Sbjct: 5 CLNLPLRPAFVKQPVWGKSIYGPL 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,376
Number of Sequences: 5004
Number of extensions: 16452
Number of successful extensions: 59
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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