Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d06
(221 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0247 + 10925329-10925566,10925744-10926357,10926723-109272... 31 0.13
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 0.67
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 27 1.5
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 27 1.5
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 27 1.5
05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448... 27 2.0
09_02_0237 + 6141048-6141962 27 2.7
12_02_0299 - 17051570-17052474,17053542-17053755 26 4.7
01_03_0171 - 13419944-13421362 26 4.7
11_06_0252 - 21713955-21714473 25 6.2
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929... 25 6.2
05_05_0093 + 22336593-22337198,22338123-22339076 25 6.2
02_02_0343 + 9163976-9165220 25 6.2
01_03_0169 - 13405789-13407504 25 6.2
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 25 8.3
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 25 8.3
05_01_0076 - 517056-517370 25 8.3
>05_03_0247 +
10925329-10925566,10925744-10926357,10926723-10927238,
10927376-10927504
Length = 498
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 145 VCPKDGCKQTPPPKLTDPCPKGNPCLNFPI 56
+CP +G P P+ PCP G C+N P+
Sbjct: 162 ICPDNGRPARPFPQGKFPCPGGAGCMNPPL 191
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFP 59
P +P+PS L KK+ + P TPPP P P P L P
Sbjct: 28 PSLPLPS--ALMPPKKRRLFTPAPRHAATPPPPPPPPTPAVEPTLPIP 73
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 199 WVPIPSWTELKREKKQPVVCPKDGCKQTPPPK--LT--DP-CPKGN 77
++P P + EKK CPK CK P PK LT DP PK N
Sbjct: 14 FLPFPLGISQRSEKKSSEYCPK--CKLIPIPKSQLTTYDPQIPKSN 57
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 169 KREKKQPVVCPKDGCKQTPPPKLTDPCPKGNP 74
KR + +P P+D PPPK + P P+G P
Sbjct: 88 KRGRGRPPK-PRDPNAPPPPPKPSSPRPRGRP 118
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 205 DPWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIR 53
+P+ IP E +RE+K+ CP + P+L + P +F +R
Sbjct: 598 EPFTLIPRNREREREEKRSAQCPDATDQSRFSPRLVSFLRRAEPSRSFSLR 648
>05_03_0248 +
10942363-10942612,10942702-10943345,10944301-10944816,
10945085-10945237,10945545-10945637
Length = 551
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 145 VCPKDGCKQTPPPKLTD-PCPKGNPCLNFPI 56
+CP++G P + + PCP G C+N P+
Sbjct: 173 ICPENGRPARPFSQTSRFPCPGGAGCMNQPL 203
>09_02_0237 + 6141048-6141962
Length = 304
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 148 VVCPKDGCKQTPPPKLTDP-CPKGN 77
V CP+DGC P+L P P+ N
Sbjct: 168 VYCPEDGCASAVDPELCQPILPEDN 192
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNF 44
PW P P++ P+ P PPP P P+ P +FP P+F
Sbjct: 268 PWAPPPAFPF---PHLPPIFSPPSP-PPPPPPAFPFPFPQLPPLPHFPPLPSF 316
>01_03_0171 - 13419944-13421362
Length = 472
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 86 GARVG*FGRWRLLAAIFRTDDRLLLLPLQ 172
G G G W+L+A +F LLLLP Q
Sbjct: 26 GMSFGLDGLWQLIAGLFSGLVHLLLLPFQ 54
>11_06_0252 - 21713955-21714473
Length = 172
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 160 KKQPVVCPKDGCKQTPPPKLTDPCPKGNPC 71
K P VC K P PK T P P +PC
Sbjct: 6 KPPPFVCFK--WPWGPDPKATSPSPSPSPC 33
>07_03_1519 +
27390204-27390590,27390591-27390809,27392516-27392962,
27393076-27393274,27393372-27393456,27393566-27393998
Length = 589
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 211 NFDPWVPIPSWTELKREKKQPV 146
+FDPW+P P + E PV
Sbjct: 207 HFDPWIPYPPMAPYQPEWHAPV 228
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 178 TELKREKKQPVVCPKDGCKQTPPPKLTDPCP 86
T R+ K V+ DG PP DP P
Sbjct: 475 TTFTRKDKYRVLAGNDGIVNVKPPAAADPAP 505
>02_02_0343 + 9163976-9165220
Length = 414
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 146 RLS*RWLQADATSQTNRPVPQRKSMPELS 60
R+ RW DA ++T++P+P S+ ELS
Sbjct: 175 RMFSRWCMVDAGARTSKPLP--SSLRELS 201
>01_03_0169 - 13405789-13407504
Length = 571
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 86 GARVG*FGRWRLLAAIFRTDDRLLLLPLQ 172
G G G W+L+A +F LLLLP Q
Sbjct: 30 GMSFGLDGLWQLIAGLFGGLIHLLLLPFQ 58
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 220 LARNFDPWVPIPSWTELKR 164
L R P P+PSWT +++
Sbjct: 461 LLRGSSPQKPVPSWTSIRK 479
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 112 PPKLTDPCPKGNPCLNFPIRP 50
PP P+ NP L FP+RP
Sbjct: 16 PPLPARRLPRRNPSLPFPLRP 36
>05_01_0076 - 517056-517370
Length = 104
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 160 KKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNF 62
+K+ V+ G K++PPP + P PC ++
Sbjct: 35 RKEQVMKTTKGLKKSPPPPSSSPEQVKMPCRSY 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,318,288
Number of Sequences: 37544
Number of extensions: 119774
Number of successful extensions: 464
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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