Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d06
(221 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21324-18|AAA62570.2| 419|Caenorhabditis elegans C-type lectin ... 28 0.78
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 0.78
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 0.78
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 0.78
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 0.78
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 28 1.0
AF016444-8|AAB65934.1| 219|Caenorhabditis elegans Hypothetical ... 28 1.0
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 28 1.0
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 26 3.1
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 26 3.1
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 26 3.1
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 26 4.2
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 26 4.2
AF016444-9|AAB65923.1| 201|Caenorhabditis elegans Hypothetical ... 26 4.2
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 25 5.5
AF024494-11|AAB70329.1| 188|Caenorhabditis elegans Hypothetical... 25 5.5
AF016444-11|AAB65922.1| 203|Caenorhabditis elegans Hypothetical... 25 5.5
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 25 7.3
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 25 7.3
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 25 7.3
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 25 7.3
U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical pr... 25 7.3
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 25 7.3
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 25 7.3
AF039044-3|AAG24121.1| 197|Caenorhabditis elegans Hypothetical ... 25 7.3
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 25 7.3
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 25 7.3
Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z68303-3|CAA92638.1| 248|Caenorhabditis elegans Hypothetical pr... 25 9.6
U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical pr... 25 9.6
U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical pr... 25 9.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 25 9.6
AF039044-6|AAG24124.1| 165|Caenorhabditis elegans Hypothetical ... 25 9.6
>U21324-18|AAA62570.2| 419|Caenorhabditis elegans C-type lectin
protein 5 protein.
Length = 419
Score = 28.3 bits (60), Expect = 0.78
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Frame = -2
Query: 220 LARNFDPWV-PIPSWTELKREKKQPVVCPKDG---CKQTPPPKLTDPCPKGNP 74
L N+ P V P+ W P +C + C TPPP P P NP
Sbjct: 255 LLSNYQPSVVPMGYWFSFPCTAAVPFICKRSAGIKCSGTPPPVTVTPVP-SNP 306
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 0.78
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 181 WTELKREKKQPVVCPKDGC 125
WTE + + ++CPKDGC
Sbjct: 3703 WTEEEARPAKELLCPKDGC 3721
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 0.78
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 181 WTELKREKKQPVVCPKDGC 125
WTE + + ++CPKDGC
Sbjct: 3703 WTEEEARPAKELLCPKDGC 3721
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 0.78
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 181 WTELKREKKQPVVCPKDGC 125
WTE + + ++CPKDGC
Sbjct: 3703 WTEEEARPAKELLCPKDGC 3721
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 0.78
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 181 WTELKREKKQPVVCPKDGC 125
WTE + + ++CPKDGC
Sbjct: 3703 WTEEEARPAKELLCPKDGC 3721
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 205 DPWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDP 92
+ + +PS E ++ ++P++ K + PPP++T P
Sbjct: 1256 ESFTALPSLPEQQQHHREPLLKKKPPLQPPPPPQMTGP 1293
>AF016444-8|AAB65934.1| 219|Caenorhabditis elegans Hypothetical
protein C36C5.12 protein.
Length = 219
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 208 FDPWVPIPSWTELKREKKQPVVCPKDGCKQ 119
FD W PIP L+ ++K+ K+ CK+
Sbjct: 145 FDNWDPIPDGIHLEEDEKKVEKMKKETCKR 174
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 205 DPWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDP 92
+ + +PS E ++ ++P++ K + PPP++T P
Sbjct: 1256 ESFTALPSLPEQQQHHREPLLKKKPPLQPPPPPQMTGP 1293
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical protein
F27D4.6 protein.
Length = 1008
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 193 PIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRP 50
P+P T +K E K+ V + + P + P+ + ++FPIRP
Sbjct: 934 PVPFPTTMKPEVKRTPVSVVSPVQPSQPVPKAEIRPQPSITMSFPIRP 981
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 148 VVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIAS 32
VV G K + PP T K + +N P PN S +S
Sbjct: 437 VVSILQGTKPSAPPASTSSSSKNSSSINSPKTPNISGSS 475
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 148 VVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIAS 32
VV G K + PP T K + +N P PN S +S
Sbjct: 437 VVSILQGTKPSAPPASTSSSSKNSSSINSPKTPNISGSS 475
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 169 KREKKQPVVCPKDGCKQTPPPKLTDPCPK 83
K++K +V D C++ P P DP K
Sbjct: 808 KKDKSNILVTTSDNCEEIPDPSSIDPNKK 836
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNF 62
P P P T + K+P VC GC + L +PC +F
Sbjct: 141 PTSPEPEVTTSTEKPKEPEVCSTPGCVRAATHFLNAMNTSVDPCDDF 187
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 94 PCPKGNPCLNFPIR 53
P P G+PC N P R
Sbjct: 32 PTPSGSPCFNAPAR 45
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNF 62
P P P T + K+P VC GC + L +PC +F
Sbjct: 141 PTSPEPEVTTSTEKPKEPEVCSTPGCVRAATHFLNAMNTSVDPCDDF 187
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 94 PCPKGNPCLNFPIR 53
P P G+PC N P R
Sbjct: 32 PTPSGSPCFNAPAR 45
>AF016444-9|AAB65923.1| 201|Caenorhabditis elegans Hypothetical
protein C36C5.14 protein.
Length = 201
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 208 FDPWVPIPSWTELKREKKQPVVCPKDGCK 122
FD W PIP+ T +++ + D CK
Sbjct: 127 FDDWDPIPNKTHSEKDAAKVEKIKNDACK 155
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPC 71
P VP+ +LKR+K++ + PPP P P+ PC
Sbjct: 378 PDVPLDK-KKLKRQKQKLRKAAEPPEPTPPPPPPVIPVPEAKPC 420
>AF024494-11|AAB70329.1| 188|Caenorhabditis elegans Hypothetical
protein C38C3.8 protein.
Length = 188
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 151 PVVCPKDGCKQTPPP 107
P CP D CK PPP
Sbjct: 163 PPECPCDKCKADPPP 177
>AF016444-11|AAB65922.1| 203|Caenorhabditis elegans Hypothetical
protein C36C5.15 protein.
Length = 203
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 208 FDPWVPIPSWTELKREKKQPVVCPKDGCK 122
+D W PIP+ T L+ + + D CK
Sbjct: 129 YDDWDPIPNKTHLETDAAKIEKIKNDACK 157
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 160 KKQPVVCPKDGCKQTPPPKLTDPC 89
+++ V C C +T PK+ D C
Sbjct: 1510 RRRSVSCTSSSCDETRKPKMFDKC 1533
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 160 KKQPVVCPKDGCKQTPPPKLTDPC 89
+++ V C C +T PK+ D C
Sbjct: 1510 RRRSVSCTSSSCDETRKPKMFDKC 1533
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 142 CPKDGCKQTPPPKLTDPCPKGNP 74
CP + ++ PP + PCPKG P
Sbjct: 141 CPLNQVREPPPCR---PCPKGPP 160
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 142 CPKDGCKQTPPPKLTDPCPKGNP 74
CP + ++ PP + PCPKG P
Sbjct: 178 CPLNQVREPPPCR---PCPKGPP 197
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 82 LWGTGRLVWEVASACS 129
+WG G +WE+ S CS
Sbjct: 675 VWGFGVTMWEIFSLCS 690
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 82 LWGTGRLVWEVASACS 129
+WG G +WE+ S CS
Sbjct: 705 VWGFGVTMWEIFSLCS 720
>U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical
protein R03E9.2 protein.
Length = 610
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 119 LLAAIFRTDDRLLLLPLQFGPRRY 190
L I + DD++L +PL+ G R+Y
Sbjct: 148 LTVVISQGDDQILKIPLKSGSRKY 171
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 142 CPKDGCKQTPPPKLTDPCPKGNP 74
CP + ++ PP + PCPKG P
Sbjct: 162 CPLNQVREPPPCR---PCPKGPP 181
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -2
Query: 163 EKKQPVVCPKD--GCKQTPPPKLTDPCPKGNP 74
+K P +C D + PPP CPK NP
Sbjct: 344 KKVLPSICRDDLPSATKLPPPTPWKTCPKCNP 375
>AF039044-3|AAG24121.1| 197|Caenorhabditis elegans Hypothetical
protein F48G7.5 protein.
Length = 197
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 130 GCKQTPPPKLTDPCP 86
GCK TP K +PCP
Sbjct: 54 GCKSTPFAKGVNPCP 68
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 112 PPKLTDPCPKGNPCLN 65
P +L DPC PC+N
Sbjct: 276 PARLGDPCAPKRPCMN 291
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 112 PPKLTDPCPKGNPCLN 65
P +L DPC PC+N
Sbjct: 276 PARLGDPCAPKRPCMN 291
>Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical
protein W06D12.1 protein.
Length = 327
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 175 ELKREKKQPVVCPKDGCKQTPPPKL 101
E+K + P V P + CK P K+
Sbjct: 127 EMKESAEMPCVIPTEVCKNLPSSKM 151
>Z68303-3|CAA92638.1| 248|Caenorhabditis elegans Hypothetical
protein ZK809.2 protein.
Length = 248
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 58 LESSGMDFLWGTGRLVWE 111
LES + F WG GRLV +
Sbjct: 132 LESEPLRFKWGIGRLVMD 149
>U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical
protein C03G6.12 protein.
Length = 430
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 106 KLTDPCPKGNPCLNFPIRPNFSIA 35
K+ + CP N C +F R N S++
Sbjct: 93 KIKEMCPLNNKCFDFNRRINMSLS 116
>U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical
protein K10B2.2a protein.
Length = 470
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 82 GNPCLNFPIRPNFSIASLFYHVL 14
GN LNFP N + +YH L
Sbjct: 198 GNGALNFPNNYNTMVPFYYYHAL 220
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 106 KLTDPCPKGNPCLNFP 59
KLT CP+ + C+N P
Sbjct: 167 KLTSRCPEHSKCINLP 182
>AF039044-6|AAG24124.1| 165|Caenorhabditis elegans Hypothetical
protein F48G7.8 protein.
Length = 165
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 130 GCKQTPPPKLTDPCP 86
GCK TP K +PCP
Sbjct: 22 GCKSTPFRKGVNPCP 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,218,989
Number of Sequences: 27780
Number of extensions: 98614
Number of successful extensions: 377
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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