Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d05
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 30 0.29
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 29 0.66
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 29 0.66
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.88
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 28 1.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.5
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 2.0
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 4.7
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 4.7
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 6.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.2
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.2
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.3 bits (65), Expect = 0.29
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 631 EMNDMTSIVSNTKAGFPST-EXRTNKANCSNKIHQNTISKYVWNISTSSRAFQSCDETAV 455
+ + TSI + TKAGF S+ +N + ++ + +TI+K + STS+ S +
Sbjct: 848 DASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYSIPSS 907
Query: 454 SC--SSNMSQPSNVT 416
S S SN+T
Sbjct: 908 SSRNEGTTSYSSNIT 922
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.66
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 YKIVYILMFYFSQTTLVVCYILHHLQCSQTVAFFQNL--IIKSCIKNCVVLRV 172
Y I IL F + + C +H+Q S ++FF L I++ C+ N +LRV
Sbjct: 572 YIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFFVTLAEIMRRCMWN--ILRV 622
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = -1
Query: 712 DDVRSITDKDIDVTEENFTLQLTDVLNEMNDMTSIVSN 599
DD+R++ ++D+D E+ F+ QL+ V + ++ ++ N
Sbjct: 466 DDLRNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKN 503
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.88
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = -2
Query: 567 EQIRRTVPIKSIRIQYLNMSGTF 499
+Q+RRT+PIK I+I++ ++S F
Sbjct: 554 KQLRRTLPIKRIKIEFSHISEEF 576
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -1
Query: 565 TNKANCSNKIHQNTISKYVWNISTSSRAFQSCD-ETAVSCSSNMSQPSNVTTLERINDLD 389
TN + S H +S Y S+ ++A +C C ++ P+N TTL +N +
Sbjct: 297 TNHVDSSYLPHPIQLSNYFTLPSSCAQADAACQCGDNCECLGCLTHPNNATTLAALNHIS 356
Query: 388 FID---IKLNNLKTEFETSV*N*NQY 320
++ I +L F+ V + N Y
Sbjct: 357 ALEKETISHTDLHHTFKHEVNSSNNY 382
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 278 HYMYVLEYSQYLLEAERIEW 219
HYM+VLE +Y ERIEW
Sbjct: 488 HYMFVLEQEEY--TQERIEW 505
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 444 DEQDTAVSSQD*KALELVEMFQTYLDIVF*WILLEQF-ALFVLXSVDGNPAFVLDTILVI 620
D + A+SS+ E E+ +T L I+ W L E+F AL L + N + L I +
Sbjct: 495 DSLERALSSKKITDTEKNELLETCLSILDSWSLAERFPALDALRLLAINSSSDLAPIFLE 554
Query: 621 SFISLRTSVNCKVKFSSVTSM 683
F + SV F S+ M
Sbjct: 555 VFSRVVKSVPSSGNFESINVM 575
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 547 SNKIHQNTISKYVWNISTSSRAFQSCDETAVSCSSNMSQPSNVTT 413
+N I T + Y +ISTS + + DET+VS S ++ S +TT
Sbjct: 65 TNGITPGTTTIYPTSISTSGVSSNNIDETSVSSESIIT--STITT 107
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 262 WNIRSIFWKLNALNGKPIIGDILNQEQVN 176
WN R W++ L +P++GD++ + N
Sbjct: 472 WN-RVASWRIKNLGDRPVVGDLVYSTESN 499
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = -1
Query: 598 TKAGFPSTEXRTNKANCSNKIHQNTISK-----YVWNISTSSRAFQSCDETAVSCSSNMS 434
TK P+ E R +C+N+ +QN + K V I +S + A +
Sbjct: 307 TKHNHPAHEIRKQLLSCTNQTNQNNVVKNSASVLVRQIMGDYNITESAVDGAKQMPTEFP 366
Query: 433 QPSNVTTLER---INDLDFIDIKLNN 365
+P N+ +E+ ++ L+ ++ +L N
Sbjct: 367 KPENLLPVEKRAAMSPLNLLEPRLIN 392
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 718 KLDDVRSITDKDIDVTEENFTLQLTDVLNEMNDMTSIVSNTKAGFPSTEXRTNKAN 551
K+D + I + + EN ++L ++ ++ D SIV + G P T N
Sbjct: 83 KIDLLLDIATETSEFKRENKAIELPSLVTQIKDAESIVIKHRQGSPVDNTPTRILN 138
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 601 NTKAGFPSTEXRTNKANCSNKIHQN 527
N+ GFPS T+ A+CS + H++
Sbjct: 68 NSSNGFPSETLVTSSAHCSTQPHKD 92
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 612 VLYLIRRLGFHQLNXEQIRRTVPI 541
+LYL R+LG H LN + VPI
Sbjct: 1746 LLYLRRQLGHHALNPFEANYWVPI 1769
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 86 HHLQCSQTVAFFQNLIIKSCIKN 154
++++C +TVA + I K+CI N
Sbjct: 94 YNIECKKTVALSMDSITKTCILN 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,114
Number of Sequences: 5004
Number of extensions: 60311
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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