Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d05
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0730 + 6505759-6508806                                           30   1.6  
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207...    29   3.7  
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534...    26   7.0  

>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = -1

Query: 442 NMSQPSNVTTLERINDLDFIDIKLNNLKTEFETSV*N*NQ--YNEVTLPIEIEKIRSIIC 269
           +MSQ   +T  ER+ +L ++D+   N+  E   S+       Y +++    I +      
Sbjct: 131 SMSQLPVITGFERLTELVYLDLSDTNIAGELPASIGRLTNLVYLDLSTSFYIVEYNDDEQ 190

Query: 268 MFWNIRSIFWKLNALNGKPIIGDILNQEQVN 176
           + +N  S+ W+L+A N + ++ ++ N E+++
Sbjct: 191 VTFNSDSV-WQLSAPNMETLLENLSNLEELH 220


>04_04_0843 -
           28619064-28619280,28619730-28619825,28620349-28620720,
           28620849-28621161,28621183-28621393,28621478-28621681,
           28622328-28622726
          Length = 603

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 314 SYITDRNRENTFHYMYVLEYSQYLLEAERI 225
           +Y+ D  R N   Y+Y+L    YL+E +R+
Sbjct: 270 AYMFDMVRGNAVSYLYILADGSYLIEVDRL 299


>01_06_0891 -
           32752825-32752932,32753085-32753176,32753293-32753408,
           32754055-32755969,32756037-32756171,32756549-32756870
          Length = 895

 Score = 25.8 bits (54), Expect(2) = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 562 NKANCSNKIHQNTISKYVWNISTSSRAFQSCDET 461
           N+++CS   H+N  S + W +ST +   +  DET
Sbjct: 352 NESSCSGLFHKNDSSFFNW-MSTLTNGVKVFDET 384



 Score = 20.6 bits (41), Expect(2) = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 622 DMTSIVSNTKAGFPSTE 572
           DM++ VSNT  G  S E
Sbjct: 301 DMSNCVSNTNEGDDSNE 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839,944
Number of Sequences: 37544
Number of extensions: 310369
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)