Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d05
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 34 0.12
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 29 4.4
U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 28 7.7
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 28 7.7
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 28 7.7
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +3
Query: 390 SKSLMRSNVVTLDG-CDIFDEQDTAVSSQD*KALELVEMFQTYLDIVF*WILLEQFALFV 566
+K L +S +V +G C++++ T V +D + L ++F T +D+ + W+L+ + FV
Sbjct: 68 TKKLKKSRLVGKNGICNVYN---TNVPKKDRQYLR--DIFTTMIDVKWRWMLMLFASAFV 122
Query: 567 L-XSVDGNPAFVLDTILVISFISLRTSVN---CKVKFSSVTSMSLSVME 701
L S+ G +++ LV +SL T VN C + SV S L +E
Sbjct: 123 LSWSIFGTTYYLI--ALVHGDLSLPTPVNHTACVMNLDSVYSSFLFAVE 169
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/72 (20%), Positives = 30/72 (41%)
Frame = -1
Query: 634 NEMNDMTSIVSNTKAGFPSTEXRTNKANCSNKIHQNTISKYVWNISTSSRAFQSCDETAV 455
N +D T + S + +PST +++ ++ + N SK+ T V
Sbjct: 417 NRSSDSTPLPSPSPYSYPSTPLNHFQSSSNSPVFSNNHSKFNTEAVTCEAGMLCPPTIVV 476
Query: 454 SCSSNMSQPSNV 419
C S + P+++
Sbjct: 477 QCPSTCASPNHM 488
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 718 KLDDVRSITDKDIDVTEENFTLQLTDVLNEMNDMTSIVSNT 596
+LDD R D +E N T+ + D ++D+T++VSNT
Sbjct: 174 QLDDGREAR-YDYVTSEFNLTMVIADQAPSLSDLTTLVSNT 213
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 718 KLDDVRSITDKDIDVTEENFTLQLTDVLNEMNDMTSIVSNT 596
+LDD R D +E N T+ + D ++D+T++VSNT
Sbjct: 174 QLDDGREAR-YDYVTSEFNLTMVIADQAPSLSDLTTLVSNT 213
>U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical
protein D2096.12 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -1
Query: 694 TDKDIDVTEENFTLQLTDVLNEMNDMTSIVSNTKAGFPSTEXRTNKANCSNKIHQNTISK 515
+D D D + E F T N + S +T+A P + N +HQ +SK
Sbjct: 41 SDPDSDDSFETFAPTQTTTGNSLKSSASSTQSTEAKPPPVQFPPPSKNPPKHVHQQNVSK 100
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 628 MNDMTSIVSNTKAGF---PSTEXRTNKANCSNKIHQNTISKY--VWNISTSSRAFQSCDE 464
M + ++ +AGF P+ E ++ N S + S ++N+ST+ +
Sbjct: 358 MRESHTVEEQLRAGFESEPAKESASSPKNLSLSKDGSATSPINEIFNLSTTMASILDSTN 417
Query: 463 TAVSCSSNMSQPSNVTTL 410
AVS +S QPS ++ L
Sbjct: 418 NAVSSTSTTEQPSALSAL 435
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 628 MNDMTSIVSNTKAGF---PSTEXRTNKANCSNKIHQNTISKY--VWNISTSSRAFQSCDE 464
M + ++ +AGF P+ E ++ N S + S ++N+ST+ +
Sbjct: 380 MRESHTVEEQLRAGFESEPAKESASSPKNLSLSKDGSATSPINEIFNLSTTMASILDSTN 439
Query: 463 TAVSCSSNMSQPSNVTTL 410
AVS +S QPS ++ L
Sbjct: 440 NAVSSTSTTEQPSALSAL 457
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 628 MNDMTSIVSNTKAGF---PSTEXRTNKANCSNKIHQNTISKY--VWNISTSSRAFQSCDE 464
M + ++ +AGF P+ E ++ N S + S ++N+ST+ +
Sbjct: 380 MRESHTVEEQLRAGFESEPAKESASSPKNLSLSKDGSATSPINEIFNLSTTMASILDSTN 439
Query: 463 TAVSCSSNMSQPSNVTTL 410
AVS +S QPS ++ L
Sbjct: 440 NAVSSTSTTEQPSALSAL 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,447
Number of Sequences: 27780
Number of extensions: 329618
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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