Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d05
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   2.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.0  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   6.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.7  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 107 FGNIVNGVVCSRQQGW 60
           F  I+  +VC RQ GW
Sbjct: 62  FDAIMQAIVCRRQIGW 77


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 308 ITDRNRENTFHYMYVLEYSQYLLE 237
           IT R    ++H+M  +EY   ++E
Sbjct: 155 ITPRQSHQSYHHMDSVEYKPEIME 178


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 65  LVVCYILHHLQCSQTVAF 118
           LV CY+  H +  QTV F
Sbjct: 114 LVKCYVEFHPEVLQTVPF 131


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 709 DVRSITDKDIDVTEENFTLQLTDVLNEMNDMTSIV 605
           +VR I+   I     N T+QL   L E +D TS++
Sbjct: 58  NVRPISSHQI---ANNVTMQLLPKLMEFDDWTSVM 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,468
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)