Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d04
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    19   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 296 TVSLKHPPGATKAPSNANRSVMSLQP 219
           +VS+  PP A   P N N   +   P
Sbjct: 761 SVSIPPPPSAQNVPQNTNSQAIPRIP 786


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 185 GLIGCTTLHKR 153
           GLIGC TL +R
Sbjct: 213 GLIGCLTLGRR 223


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 54  SNYIRKKFKQ*SFNLDGTNRAQMP 125
           SNY    +KQ  +N++   +  +P
Sbjct: 92  SNYNNNNYKQLCYNINHIEQIPVP 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,296
Number of Sequences: 438
Number of extensions: 922
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)