Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d03
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163...    29   4.1  
11_04_0232 + 15163347-15163952                                         28   7.1  
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82...    28   9.4  

>06_01_0213 +
           1628974-1629339,1629441-1629590,1630935-1631095,
           1631178-1631892,1632045-1632091,1632295-1632316
          Length = 486

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 584 EPSPLQITAKFVPALSLIAKTCASPVSSLVYPYPY 688
           EPS + IT+   PA+ +++   A P ++ + P PY
Sbjct: 189 EPSQVVITSGATPAMEILSFCLADPGNAFLVPSPY 223


>11_04_0232 + 15163347-15163952
          Length = 201

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -1

Query: 752 SAYCTQTHPPLQRTSPLPIKPDMDMDTPEKKPAMHR-SW----QLMTELVQILQLSVTAT 588
           S Y  Q   P+ R+SP+P+K  +  +  ++   + R  W    +L +E+++I   S+T T
Sbjct: 85  SNYSCQKSAPVLRSSPMPLKEILFKEMQQELTTIMRDEWLREVELSSEVIRINTPSLTIT 144

Query: 587 AL 582
            L
Sbjct: 145 CL 146


>05_01_0119 +
           820566-820739,822708-822737,823153-823266,823341-823433,
           823521-823586,824076-824174,824480-824559,825039-825151,
           825600-825688,825955-826041,826128-826130,826285-826383
          Length = 348

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 509 YGNTVRFSKYSILIAYSNR*HSKTREPSPLQITAKFVPALSLIAKTCASPVSSLV 673
           YG    F +YS+ + + NR  + T     L  + K +  ++ + K C   VS+++
Sbjct: 76  YGAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKSLDPVAPLQKYCVVSVSNIL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,694
Number of Sequences: 37544
Number of extensions: 331830
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)