Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d03
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    31   0.90 
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    31   0.90 
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 620 VQILQLSVTATALAFYYVIYCYMQLIYYTLRS 525
           +  LQ  +      F++VI+C + +IYYT+R+
Sbjct: 476 LNFLQYFLVDVIAFFFFVIFCTLSIIYYTIRT 507


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 327 CPNICIACHNS---YSSAC*NEVLY*FSSQYSDQSLHSNNQIET 449
           CP IC  C N    Y+S+C   V   ++++YS  +  S N I T
Sbjct: 325 CPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIRT 368


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 327 CPNICIACHNS---YSSAC*NEVLY*FSSQYSDQSLHSNNQIET 449
           CP IC  C N    Y+S+C   V   ++++YS  +  S N I T
Sbjct: 325 CPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIRT 368


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 367 ELYELWHAIQIFGQDSGSNVPLRVVVHNESVFEFISSECK 248
           E+ + WH+  + G  SGS        HN+++F F+S + +
Sbjct: 108 EMTQSWHSNHVNGASSGSGSGSTPEHHNKNIFSFLSRQSR 147


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 367 ELYELWHAIQIFGQDSGSNVPLRVVVHNESVFEFISSECK 248
           E+ + WH+  + G  SGS        HN+++F F+S + +
Sbjct: 108 EMTQSWHSNHVNGASSGSGSGSTPEHHNKNIFSFLSRQSR 147


>Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical
           protein T26E4.5 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 509 YGNTVRFSKYSILIAYSNR*HSKTREPSPLQIT-AKFVPALSLIAKTCASPVSSLVYPYP 685
           +GN V F+K        N  H + R P+P   T  K  P  S+I    ++P + L +   
Sbjct: 212 FGNDVNFAKAVFEDRIFNSSHLQDRTPTPPNYTIPKISPEYSVILPQNSTPENDLAFSRQ 271

Query: 686 -YQVLLAT 706
            Y V+L T
Sbjct: 272 FYDVMLIT 279


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 728  PPLQRTSPLPIKPDMDMDTPEKKPAM 651
            P  ++ +PL I  ++  DTPEKKP M
Sbjct: 1106 PQQKKKAPLSILDELLPDTPEKKPVM 1131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,909
Number of Sequences: 27780
Number of extensions: 335548
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)