Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d02
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.8  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    27   3.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   8.8  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 279  YLTVRSSYSQLNFILLFNAWLRIIIIVAVEF 187
            +L ++    +  F LL+N +LRII+++  +F
Sbjct: 1795 FLDLKDDIDKAQFKLLYNGFLRIILVLLHDF 1825


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 477 RVRAKIKI---HISKLHLHKVNLHPTYLR*YW 563
           R+R+ + I   ++  LH   VNLH TY+  YW
Sbjct: 97  RIRSLVVIPSENLGPLHEAIVNLHSTYMTLYW 128


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 313 FI*YSFLDVFPKIIICFKFERKKFGHGI*YFCQYRSLKSHLLLGY 447
           FI Y F  +    I+C K+    F  G    C   S+ S+LLLGY
Sbjct: 425 FISYPFQSL--AFIVCLKYCSFYFFIGPICICLLGSISSYLLLGY 467


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -3

Query: 423  E*SILAKVSNSVTEFFSFKLKTNNNFREHVKERILYEMNEMI*ILQHYYLTVRSSYSQLN 244
            E S+++KV  S   F  F LK  N F++   + I+  +N+++ +     L   S Y Q+N
Sbjct: 1521 ENSMISKVGLSC--FSQFVLKNKNQFKDVDWDEIINSINQLLQMTLPIELRDPSLYPQVN 1578


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369  KLKTNNNFREHVKERILYEMNEM 301
            +L   NN +EHV ER + E N+M
Sbjct: 1385 RLNLVNNHKEHVLERAMSENNKM 1407


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 408 AKVSNSVTEFFSFKLKTN--NNFREHVKERILYEMNEMI*ILQHYYLTVRSSYSQLNFIL 235
           A + NS T    F+L  N  N  +E+V++     ++       H+Y TV +SY     +L
Sbjct: 46  AYLPNSATAQMGFQLGKNAVNAGQEYVEQNFGKWLSTT---RLHHYFTVTNSYVVAKLLL 102

Query: 234 LFNAWLR 214
           +   W R
Sbjct: 103 IIFPWRR 109


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/68 (23%), Positives = 23/68 (33%)
 Frame = +1

Query: 499 YIFLNYICIKLICTQLIYDDIGNEEKHPPNFSXXXXXXXXXXXXXXXXQRDQNPTKINLY 678
           Y+ ++Y C +  C QLI   I       P F                 Q    PT   + 
Sbjct: 5   YLVVSYFCNRYSCWQLIIIGITGSMHGAPEFLTKVKQQYLQQVDLYRFQWVSKPTDWPIL 64

Query: 679 FEDNMKIF 702
           F D  ++F
Sbjct: 65  FNDYAQVF 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,305
Number of Sequences: 5004
Number of extensions: 52383
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)