Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d02
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0458 + 18406844-18408877                                         31   0.98 
07_03_0460 + 18425464-18427473                                         30   2.3  
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418...    30   2.3  
07_03_0454 + 18364654-18366594                                         29   3.0  
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    29   5.2  

>07_03_0458 + 18406844-18408877
          Length = 677

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 535 KLTLCKCNLEICILIFARTRIARRAVNYDNNLRAGGF*VIYTG 407
           K  L K +++  +  F R ++ R   NY   L  GGF V+Y G
Sbjct: 17  KEVLAKADIDPNVRCFTRRQMKRITNNYSTTLGRGGFSVVYKG 59


>07_03_0460 + 18425464-18427473
          Length = 669

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 535 KLTLCKCNLEICILIFARTRIARRAVNYDNNLRAGGF*VIYTGK 404
           K  L K +++  +  F + ++ R   NY   L  GGF V+Y G+
Sbjct: 66  KEVLAKTDIDPNVRCFPKRQMKRITNNYSTTLGRGGFSVVYKGR 109


>05_01_0501 -
           4184932-4185048,4185360-4185456,4185537-4185709,
           4186225-4186305,4186959-4187072,4187177-4187497
          Length = 300

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 98  ILISINSLFVEPTNQPLKAKV*FTY-F*IK*NSTATIMIIRNH 223
           I + + S+++E  +QPLK +  F Y   I  NS   + ++R H
Sbjct: 174 IRVQVRSVYIESRSQPLKGQFFFAYRIRITNNSQRPVQLLRRH 216


>07_03_0454 + 18364654-18366594
          Length = 646

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 535 KLTLCKCNLEICILIFARTRIARRAVNYDNNLRAGGF*VIYTGK 404
           K  L K +++  +  F R ++ R + NY   L  GGF V+Y G+
Sbjct: 17  KEMLAKTDIDPNVKCFTRKQMKRISNNYRTILGKGGFSVVYKGR 60


>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 526 LCKCNLEICILIFARTRIARRAVNYDNNLRAGGF*VIYTGK 404
           L K +++  +  F R ++     NY   L  GGF V+Y GK
Sbjct: 55  LAKADIDPNVRCFTRRQMKHITNNYGTVLGKGGFSVVYKGK 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,533
Number of Sequences: 37544
Number of extensions: 255751
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)