Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d01
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 34 0.019
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 32 0.077
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 31 0.18
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 31 0.24
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 0.72
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 29 0.72
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 29 0.95
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.95
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 29 0.95
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 29 0.95
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.9
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 2.9
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 27 3.8
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 27 3.8
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |... 27 3.8
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 5.1
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 5.1
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 5.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.7
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 6.7
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 6.7
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 6.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.7
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 8.9
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.9
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 25 8.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 8.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 8.9
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 8.9
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 34.3 bits (75), Expect = 0.019
Identities = 25/124 (20%), Positives = 55/124 (44%)
Frame = -2
Query: 501 SSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRKNRESVNDEGYRTT 322
SS+N E T + ++D+++ K+A++ S E T ++ + N+ + +
Sbjct: 360 SSENIKADQPENSTKQENPEEDMQI--KDAEEHSNLESTPAAQQT--SEVEANNHQEKPS 415
Query: 321 GCPKISLIDYPDETLGTLKADAMDLNENPNNAIEDGKINQDNKSDASEMRNKKLGSLVNE 142
P + I+ +E T + + ++ + NN + INQ+ + + + S NE
Sbjct: 416 SLPAVEQINVNEEN-NTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANE 474
Query: 141 QNFE 130
+ E
Sbjct: 475 EEAE 478
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 32.3 bits (70), Expect = 0.077
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -2
Query: 537 LSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLS--KNADKQSTKEITTKEEKNR 364
LS EST Q+++S N DK N++ETL +++ + LS ++ +K E+ ++K
Sbjct: 808 LSEESTRLQELQSQLNQDK--NQIETLNERISAAADELSSMESINKNQANELKLAKQKCS 865
Query: 363 KNRESVN 343
+E +N
Sbjct: 866 NLQEKIN 872
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 31.1 bits (67), Expect = 0.18
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 333 YRTTGCPKIS-LIDYPDETLGTLKADAMDLNENPNNAIEDGKINQDNKSDASEMRNKKLG 157
Y TG P I+ L D +E +K A++ +N E+GK +QD+ S S RNK
Sbjct: 110 YEDTGLPVINELSDMLEEGYQEVKPYAVNW-DNVLKEEEEGKDSQDDPSVLSHKRNKSSK 168
Query: 156 SLVNEQNFEL 127
L++ + L
Sbjct: 169 ELIDAMQWPL 178
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 30.7 bits (66), Expect = 0.24
Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 8/181 (4%)
Frame = -2
Query: 642 DRILKTVINNKIDSMIEKVRDKFCQEFG--ECANTRTLSVESTV--EQQIESSKNFDKHL 475
D V ++++ ++EK + FC +FG E + ++T+ E+++ + K +
Sbjct: 347 DTSFMNVNPDELEELLEKKLNSFCDDFGDDERSGFDNTDHDNTLVGEEEMVPGNHGGKSI 406
Query: 474 NELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRKNRESVNDEGYRTTGCPKISLID 295
NE T KQ ++ E KN S E +E + +RE T SL D
Sbjct: 407 NEEITKNKQKQNFNESDLKN--MASRIETFINDEASNNHREDFYGVKNSDTDTDSDSLAD 464
Query: 294 YPDETL--GTLKADAMDLNENPNNAIEDGKINQDNKSDASEMR--NKKLGSLVNEQNFEL 127
DE D ++ +E + GK + D E N+ + + N E
Sbjct: 465 SDDEIFLNRNQGIDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDEMDIPGDANMEE 524
Query: 126 Y 124
Y
Sbjct: 525 Y 525
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.72
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = -2
Query: 498 SKNFDKHLNELETLIKQLKDDIEVLSKNAD-KQSTKEITTKEEKNRKNRESVNDEGYRTT 322
+KNF + N+LE K + N + K+ KE E N++ ++ ++ Y
Sbjct: 276 NKNF-RSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQPEDAPSESPYSN- 333
Query: 321 GCPKISLIDYPDETLGTLKADA--MDLNENP-NNAIEDGKINQDNKSD 187
K+S D+ + ++ +++++N A EDG +N+D+K D
Sbjct: 334 ---KVSSSDFYTRSFEEIEKTFTFVEISDNEFYTASEDGFLNEDDKLD 378
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 528 ESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEK 370
ESTV +Q + N +K L +L + + ++ KN D+Q ++++ E++
Sbjct: 14 ESTVAEQRKGQSNEEKPLIDLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDE 66
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 558 ECANTRTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTK 379
E R+ + +E++ K DK + K D+IE K D++ E TT
Sbjct: 257 EARRRRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTS 316
Query: 378 EEKNRKNRESVNDEGY 331
KN+E + G+
Sbjct: 317 PILPPKNQEPIRMGGF 332
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 0.95
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = -2
Query: 690 IEECKKRKQPVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQ 511
+E C + +RV+ ++LK+ + NK+ K + NT+ +ST
Sbjct: 455 LEHCPPNQPVKVRVSYQKLLKSHVMNKLHMAHPKSHTN-RSLLRQLKNTKFF--QSTSID 511
Query: 510 QIESSKNFDKH-LNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRK 361
+E+ + N L+ LI + L N + + TK +TTKE K +
Sbjct: 512 WVEAGLQVCRQGYNMLQLLIHRKGLTYLHLDYNCNLKPTKTLTTKERKKSR 562
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.95
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = -2
Query: 633 LKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLI 454
LK ++N +++ I+KV D + E + S + + + + + K+ +L I
Sbjct: 10 LKKAMSN-VETSIDKVLDG--NQIEEMSRGNAKSKDEIIAKLLTEGQALSKNELKLNNTI 66
Query: 453 KQLKDDI---EVLSKNAD-KQSTKEITTKEEKNRKNR 355
KQLK + E K D KQ+T E+ + K + +
Sbjct: 67 KQLKKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQ 103
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 28.7 bits (61), Expect = 0.95
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 537 LSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVL 424
LSV+ST+E+ K D +N + ++ KD++ +L
Sbjct: 290 LSVDSTIEKNASEQKKDDNSVNPFTKIEEKKKDEVTLL 327
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 1.3
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 10/190 (5%)
Frame = -2
Query: 711 EQLRKQKIEECKKRKQPVLRVTMDRILK--TVINNKIDSMIEKV--RDKFCQEFGE--CA 550
E K+ E+ K+ + L+ +D + T + N+ID + + C+ E
Sbjct: 357 ESTLKENSEKFKQNSES-LKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQK 415
Query: 549 NTRTLS-VESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKE---ITT 382
N + L+ ES + ++S L+ T QLKD+I L + + + ++
Sbjct: 416 NIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSS 475
Query: 381 KEEKNRKNRESVNDEGYRTTGCPKISLIDYPDETLGTLKADAMDLNENPNNAIEDGKINQ 202
+EK + +E+VN + T SL + +E LK DL E K+ +
Sbjct: 476 AQEKQLQMKETVN----KLT-----SLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLR 526
Query: 201 DNKSDASEMR 172
+ D+ ++R
Sbjct: 527 EQTQDSQKLR 536
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 543 RTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDI-----EVLSKNADKQSTKEITTK 379
R + +EQ I + + + +EL +I+ LK I E++S NAD K+
Sbjct: 1141 RIKEISEMLEQSIATEEKLRRKNSELCDIIEALKYQIQDQETEIISLNADNLDLKDTNGV 1200
Query: 378 EEKN 367
EKN
Sbjct: 1201 LEKN 1204
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/77 (15%), Positives = 33/77 (42%)
Frame = -2
Query: 597 IEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSK 418
+++ +D E E + + + E + Q + L+ + L+ + +D+I L +
Sbjct: 261 VQREKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKR 320
Query: 417 NADKQSTKEITTKEEKN 367
+++ + E+N
Sbjct: 321 QIEEKENSSSAFENEEN 337
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 413 AFFDKTSMSSFNCFI-KVSNSFRCLSKFFEDSICCSTVDSTLNVLVLAHSPNS 568
A K + N FI K F CL + +S ST+ + L++A+ NS
Sbjct: 560 ATLTKDDANKSNNFITKARLGFHCLQMIYRESTYYSTIMEAIKNLLIAYDMNS 612
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 519 VEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKN 367
++ Q+E+S N K + ELETL +L+ + A+K + T +++K+
Sbjct: 137 LQTQVEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAAVTKTVEKKKD 187
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = -2
Query: 270 LKADAMDLNENPNNAIEDGKINQDNKSDASEMRNKK 163
L+ + ++ N ++GK ++D+K D+++ +N K
Sbjct: 174 LETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDK 209
>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 435 IEVLSKNADKQSTKEITTKEEKNRKNRESVNDEGYRTTGCPKISLIDYPDETLGTLKADA 256
I VL D ST +T + N K ++ +E +RT GC ++ + LG K DA
Sbjct: 344 ILVLCLIVDNYSTDVLTLANDLNVKTMKA--NELFRTVGCRIMAYTETQRMALGLNKTDA 401
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 447 LKDDIEVLSKNADKQSTKEITTKEEKNRKNRESVNDEGY 331
++DD+ S ++DK +T ++ + +RK R S G+
Sbjct: 589 VRDDVSSASSDSDKGTTGLGKSESKSSRKERRSSTSSGH 627
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 675 KRKQPVLRVTMDRILKTVINNKIDSMIEKVRDKF 574
++ +P+LR D I+K + N D +I K +KF
Sbjct: 603 RQPKPLLRSEADCIIKNLQNFSTDDLIIKSNEKF 636
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 534 SVESTVEQQIE--SSKNFDKHLNELETLIKQLKDDIEVLSKNADKQST 397
++E+ ++Q +E ++ +++LET I + + VL +NA ST
Sbjct: 804 AIEAQMKQDMEIARARTIKTRIDQLETSITEFNKKLMVLQRNAKNLST 851
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 420 KNADKQSTKEITTKEEKNRKNRESVNDEGYRTTGCP 313
KNA KQS + + ++ E ND+ RT G P
Sbjct: 419 KNASKQSIQNENKASYSSYEDSEIQNDDETRTVGTP 454
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/54 (24%), Positives = 21/54 (38%)
Frame = -2
Query: 501 SSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRKNRESVND 340
S N HL E + + DIE L +Q+TK + ++ +D
Sbjct: 700 SQSNIPPHLQEHRQSQQHFQQDIEALQSQQQQQATKNSLMEAAYQNAQKQKEDD 753
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 6.7
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Frame = -2
Query: 534 SVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQS-------TKEITTKE 376
+V+ T+ SK K + + T++ K D+EV N +++ TKE+ +
Sbjct: 24 NVDPTLNLLFSQSKPIPKPVAKETTVLT--KKDVEVEEANGVEEAAETIESDTKEVQNIK 81
Query: 375 EKNRKNRESVNDEGYRTTGCPKISLIDYPDETLGTLKA----DAMDLNENPNNAIEDGKI 208
K++K ++ +ND G L+ DE A D D + + +E+
Sbjct: 82 PKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPAKQSVLEERTS 141
Query: 207 NQDNKSD 187
+D KS+
Sbjct: 142 QEDVKSE 148
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 516 EQQIESSKNF-DKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRKNRESVND 340
EQQIE K ++ LN+ L L++DI+V + Q E K+E + + ++D
Sbjct: 30 EQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSD 89
Query: 339 E 337
+
Sbjct: 90 D 90
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 462 TLIKQLKDDIEVLSKNADKQSTKE-ITTKEEKNRKNRESVN 343
+LI L DD+ ++ K++ ++ T+E I T +K R + VN
Sbjct: 758 SLIVALPDDVAMVDKSSLRRPTRESICTPVKKLRSKHDIVN 798
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.7
Identities = 41/202 (20%), Positives = 89/202 (44%), Gaps = 7/202 (3%)
Frame = -2
Query: 711 EQLRKQKIEEC---KKRKQPVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTR 541
+Q+ + K+EE KK VL ++ T +N +++ + E++ + +C +
Sbjct: 835 KQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNEL-EQLEKDINKSSEDCDLQK 893
Query: 540 TLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITTKEEKNRK 361
+E + +Q ++ LNELE+ ++L+ DI+ +++ + + + + N
Sbjct: 894 KKLLEVSSKQGSQAP-----FLNELESEYEKLEADIQEMAQKSRTEILEANEYLHQLNEW 948
Query: 360 NRESVNDEGYRTTGCPKISLIDYPDET-LGTLKADAMDLN-ENPNNAIEDGKINQDNKSD 187
N E D + C K + +E + K ++ D N + D + + N SD
Sbjct: 949 NSELRIDVSTKFK-CIKEKKSNIGEEVRIIASKIESTDDNLRKLQERLADLRTRERNASD 1007
Query: 186 ASEMR--NKKLGSLVNEQNFEL 127
+R ++L V ++N+ L
Sbjct: 1008 NLRLRALMRQLEEAVTQKNYLL 1029
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = -2
Query: 711 EQLRKQKIEECKKRKQPVLRVTMDRILKTVINNKI-DSMIEKVRDKFCQEFGECANTRTL 535
E+ K E +K +P + LK V++ ++ +E++RD G+ +++
Sbjct: 15 EEAEKLVYEYLRKTNRPYSATDVSANLKNVVSKQVAQKALEQLRDTGLIH-GKLYGKQSV 73
Query: 534 SVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVL 424
V ++ + ++ + L E+E I++LKD++ V+
Sbjct: 74 FV--CLQDDLAAAT--PEELAEMEKQIQELKDEVSVV 106
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 240 NPNNAIEDGKINQDNKSDASEMRNKK 163
+PN ++E +IN D D+ + NKK
Sbjct: 912 SPNTSVELPEINSDYSDDSDDEGNKK 937
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 459 LIKQLKDDI-EVLSKNADKQSTKEITTKEEKNRKNRESVNDE 337
++KQ K++I +V S+ +K +K E+ N ++ SV +
Sbjct: 7 IVKQTKNEIHQVTSRVQEKLDSKSTNAVEQNNNSSQASVTKD 48
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 708 QLRKQKIEECKKRKQPVLRVTMDRILK 628
++RK+ IEE +K+++ R+ DRIL+
Sbjct: 61 RMRKKVIEENRKKEEIEERILTDRILQ 87
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 8.9
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Frame = -2
Query: 519 VEQQIESSKNFDKHLNEL-ETLIKQLK--DDIEVLSKNADKQSTKEITTKEEKNRKNRES 349
V+Q E + + L + E L K K DD E + ++ +EI E+ R+N ES
Sbjct: 534 VDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEES 593
Query: 348 VN---DEGYRTTGCPKISLIDYPDE--TLGTLKADAMDLNENPNNAIEDGKINQDNKSDA 184
++ +E + T Y D+ L+ L E N A ED N +
Sbjct: 594 ISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ 653
Query: 183 SEMRNKKLGSL--VNEQN 136
+M ++ SL NE+N
Sbjct: 654 LKMTEAEVDSLRKENEEN 671
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 351 SVNDEGYRTTGCPKISLID 295
S+NDEGY T PK ++++
Sbjct: 790 SMNDEGYTTISIPKANVLN 808
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +1
Query: 289 WIVNQAYFGTPSRPIA-----FVVNTF-SIFPIFLFFGCNLFSTLFIC 414
W+ QA+ G P PI+ +TF FP+F F GC+L + C
Sbjct: 5 WVQTQAWLGFPDVPISQEDKPDEYSTFLGGFPVF-FDGCSLNPNIIKC 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,212
Number of Sequences: 5004
Number of extensions: 54152
Number of successful extensions: 271
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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