Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d01
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   2.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -2

Query: 696 QKIEECKKRKQPVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRT-LSVEST 520
           QK    +K   P   + + +    + N    S++EK+R +  +EF +C N  + L+V+  
Sbjct: 132 QKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKEF-DCHNYMSELTVDIL 190

Query: 519 VEQQIESSKNFDKHLNELETLIKQLK 442
           +E  +  SK    H N  E  +  +K
Sbjct: 191 LETAMGVSKPTRDH-NAFEYAMAVMK 215


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 428 TSMSSFNCFIKVSNSFRCLSKF 493
           +++S  N  +K++  F+C++KF
Sbjct: 105 SAISDTNVHLKITKIFQCITKF 126


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 550 STLAKFLTKFISDFLYHRIY 609
           ST++ +L  F+  F Y++IY
Sbjct: 211 STISFYLPLFVMVFTYYKIY 230


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 434 MSSFNCFIKVSNSFRCLSKF 493
           +S  N  IK+S  F+C  K+
Sbjct: 107 ISDANVHIKISKIFQCFMKY 126


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 714 EEQLRKQKIEECKKRKQPVLRVTMDRILKTVINNKI 607
           +EQL+ +K+EE  ++    ++ T D +L  +I  ++
Sbjct: 369 QEQLKSKKLEESMRKLDEEMKRT-DELLYQMIPKQV 403


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 491 FFEDSICCSTVDSTLNVLVLAHS 559
           F  +S+C ST  S     VLAH+
Sbjct: 628 FLNNSMCTSTTTSPDKEHVLAHN 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,320
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)