Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c23
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1202 + 34932291-34933027,34933297-34933774                       30   2.5  
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    29   3.3  
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    28   7.6  
08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836     28   7.6  

>02_05_1202 + 34932291-34933027,34933297-34933774
          Length = 404

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 310 DTVICTDYLIFYLVVHYNYIKHNLFRCEDSKI 215
           DT+   D  +F  +V ++ + H+LFRC   K+
Sbjct: 283 DTLTLADVCLFTTLVRFDLVYHSLFRCTRRKL 314


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 120 EWSGHIGAFRVYDEQPRPEDDNYSPDRVLSMPILLSSHRNK 242
           E S H     V+ EQP  +  +Y  D      ++L SHRNK
Sbjct: 36  EASAHNDVTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNK 76


>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 789 SKNSVDEDGYSADYAAIFNIILW-FGVVFTFTLIAIVYALMDMDPGRDSIIYRMTNTRMK 613
           S  S+D+ G  AD+  I +IILW F ++     + IV    D   G    +Y +    + 
Sbjct: 98  SSISLDDPG-EADFVGILSIILWTFTMICLVKYVFIVLKADDHGEGGTFALYSLLRQHVN 156

Query: 612 -KDN*SLQLQHL 580
            K N  + + HL
Sbjct: 157 FKGNMPVPVTHL 168


>08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836
          Length = 114

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 310 PNVSRPNLSYHSSKCNTSAPRHHF 381
           P+++RPN + H +KC TS P  HF
Sbjct: 30  PSITRPNATDHFTKCITSNP--HF 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,162
Number of Sequences: 37544
Number of extensions: 398116
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)