Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c22
(689 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38238-1|AAA97864.1| 1113|Drosophila melanogaster HLH106 protein. 173 1e-43
BT010285-1|AAQ23603.1| 1113|Drosophila melanogaster LP12374p pro... 173 1e-43
AE014296-3210|AAN11632.1| 1113|Drosophila melanogaster CG8522-PC... 173 1e-43
AE014296-3209|AAN11631.1| 1113|Drosophila melanogaster CG8522-PB... 173 1e-43
AE014296-3208|AAF49115.1| 1113|Drosophila melanogaster CG8522-PA... 173 1e-43
AY051763-1|AAK93187.1| 805|Drosophila melanogaster LD29208p pro... 31 1.5
AE014298-1561|AAN09285.1| 805|Drosophila melanogaster CG1453-PE... 31 1.5
AE014298-1560|AAN09284.1| 805|Drosophila melanogaster CG1453-PD... 31 1.5
AE014298-1559|AAF48003.2| 805|Drosophila melanogaster CG1453-PC... 31 1.5
AE014298-1558|AAN09283.1| 805|Drosophila melanogaster CG1453-PB... 31 1.5
AE014298-1557|AAN09282.1| 805|Drosophila melanogaster CG1453-PA... 31 1.5
AY051627-1|AAK93051.1| 517|Drosophila melanogaster GH27756p pro... 29 6.0
AE014298-2517|AAF48693.1| 517|Drosophila melanogaster CG4955-PA... 29 6.0
>U38238-1|AAA97864.1| 1113|Drosophila melanogaster HLH106 protein.
Length = 1113
Score = 173 bits (422), Expect = 1e-43
Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Frame = -3
Query: 636 VCDLAGARLADSLAYYCCRKPTQLMMLMQVLCCDWMLEVRAGVWEATSGLRSSPA----P 469
+CD + L + L + +L Q+L CDW+LE R +WE P
Sbjct: 911 LCDESSVELQECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQVP 970
Query: 468 HQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQSAVCRMMAGAAPRRTQQLLDGSLRPRFNR 289
+ L FQ DL+SLR + +++P SR++L AVCR+MAGA+P TQQLLD SLR R
Sbjct: 971 GEVLEKFQTDLNSLRNIVENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAH 1030
Query: 288 ASIICG-KERALEGG-GGDGERAVALYMACKHLPAAVLAAPGERAGMLAQAAATLQKIGH 115
+SI CG K+R + GG+ ERA A+Y+ACK+LP A+L++PGERAGMLA+AA TL+K+G
Sbjct: 1031 SSIFCGSKDRRQQNFVGGERERASAMYVACKYLPPALLSSPGERAGMLAEAAKTLEKVGD 1090
Query: 114 RSRLPHCYNLMKSFG 70
+ +L CY LMKS G
Sbjct: 1091 KRKLKECYQLMKSLG 1105
>BT010285-1|AAQ23603.1| 1113|Drosophila melanogaster LP12374p protein.
Length = 1113
Score = 173 bits (422), Expect = 1e-43
Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Frame = -3
Query: 636 VCDLAGARLADSLAYYCCRKPTQLMMLMQVLCCDWMLEVRAGVWEATSGLRSSPA----P 469
+CD + L + L + +L Q+L CDW+LE R +WE P
Sbjct: 911 LCDESSVELQECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQVP 970
Query: 468 HQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQSAVCRMMAGAAPRRTQQLLDGSLRPRFNR 289
+ L FQ DL+SLR + +++P SR++L AVCR+MAGA+P TQQLLD SLR R
Sbjct: 971 GEVLEKFQTDLNSLRNIVENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAH 1030
Query: 288 ASIICG-KERALEGG-GGDGERAVALYMACKHLPAAVLAAPGERAGMLAQAAATLQKIGH 115
+SI CG K+R + GG+ ERA A+Y+ACK+LP A+L++PGERAGMLA+AA TL+K+G
Sbjct: 1031 SSIFCGSKDRRQQNFVGGERERASAMYVACKYLPPALLSSPGERAGMLAEAAKTLEKVGD 1090
Query: 114 RSRLPHCYNLMKSFG 70
+ +L CY LMKS G
Sbjct: 1091 KRKLKECYQLMKSLG 1105
>AE014296-3210|AAN11632.1| 1113|Drosophila melanogaster CG8522-PC,
isoform C protein.
Length = 1113
Score = 173 bits (422), Expect = 1e-43
Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Frame = -3
Query: 636 VCDLAGARLADSLAYYCCRKPTQLMMLMQVLCCDWMLEVRAGVWEATSGLRSSPA----P 469
+CD + L + L + +L Q+L CDW+LE R +WE P
Sbjct: 911 LCDESSVELQECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQVP 970
Query: 468 HQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQSAVCRMMAGAAPRRTQQLLDGSLRPRFNR 289
+ L FQ DL+SLR + +++P SR++L AVCR+MAGA+P TQQLLD SLR R
Sbjct: 971 GEVLEKFQTDLNSLRNIVENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAH 1030
Query: 288 ASIICG-KERALEGG-GGDGERAVALYMACKHLPAAVLAAPGERAGMLAQAAATLQKIGH 115
+SI CG K+R + GG+ ERA A+Y+ACK+LP A+L++PGERAGMLA+AA TL+K+G
Sbjct: 1031 SSIFCGSKDRRQQNFVGGERERASAMYVACKYLPPALLSSPGERAGMLAEAAKTLEKVGD 1090
Query: 114 RSRLPHCYNLMKSFG 70
+ +L CY LMKS G
Sbjct: 1091 KRKLKECYQLMKSLG 1105
>AE014296-3209|AAN11631.1| 1113|Drosophila melanogaster CG8522-PB,
isoform B protein.
Length = 1113
Score = 173 bits (422), Expect = 1e-43
Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Frame = -3
Query: 636 VCDLAGARLADSLAYYCCRKPTQLMMLMQVLCCDWMLEVRAGVWEATSGLRSSPA----P 469
+CD + L + L + +L Q+L CDW+LE R +WE P
Sbjct: 911 LCDESSVELQECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQVP 970
Query: 468 HQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQSAVCRMMAGAAPRRTQQLLDGSLRPRFNR 289
+ L FQ DL+SLR + +++P SR++L AVCR+MAGA+P TQQLLD SLR R
Sbjct: 971 GEVLEKFQTDLNSLRNIVENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAH 1030
Query: 288 ASIICG-KERALEGG-GGDGERAVALYMACKHLPAAVLAAPGERAGMLAQAAATLQKIGH 115
+SI CG K+R + GG+ ERA A+Y+ACK+LP A+L++PGERAGMLA+AA TL+K+G
Sbjct: 1031 SSIFCGSKDRRQQNFVGGERERASAMYVACKYLPPALLSSPGERAGMLAEAAKTLEKVGD 1090
Query: 114 RSRLPHCYNLMKSFG 70
+ +L CY LMKS G
Sbjct: 1091 KRKLKECYQLMKSLG 1105
>AE014296-3208|AAF49115.1| 1113|Drosophila melanogaster CG8522-PA,
isoform A protein.
Length = 1113
Score = 173 bits (422), Expect = 1e-43
Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Frame = -3
Query: 636 VCDLAGARLADSLAYYCCRKPTQLMMLMQVLCCDWMLEVRAGVWEATSGLRSSPA----P 469
+CD + L + L + +L Q+L CDW+LE R +WE P
Sbjct: 911 LCDESSVELQECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQVP 970
Query: 468 HQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQSAVCRMMAGAAPRRTQQLLDGSLRPRFNR 289
+ L FQ DL+SLR + +++P SR++L AVCR+MAGA+P TQQLLD SLR R
Sbjct: 971 GEVLEKFQTDLNSLRNIVENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAH 1030
Query: 288 ASIICG-KERALEGG-GGDGERAVALYMACKHLPAAVLAAPGERAGMLAQAAATLQKIGH 115
+SI CG K+R + GG+ ERA A+Y+ACK+LP A+L++PGERAGMLA+AA TL+K+G
Sbjct: 1031 SSIFCGSKDRRQQNFVGGERERASAMYVACKYLPPALLSSPGERAGMLAEAAKTLEKVGD 1090
Query: 114 RSRLPHCYNLMKSFG 70
+ +L CY LMKS G
Sbjct: 1091 KRKLKECYQLMKSLG 1105
>AY051763-1|AAK93187.1| 805|Drosophila melanogaster LD29208p
protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AE014298-1561|AAN09285.1| 805|Drosophila melanogaster CG1453-PE,
isoform E protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AE014298-1560|AAN09284.1| 805|Drosophila melanogaster CG1453-PD,
isoform D protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AE014298-1559|AAF48003.2| 805|Drosophila melanogaster CG1453-PC,
isoform C protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AE014298-1558|AAN09283.1| 805|Drosophila melanogaster CG1453-PB,
isoform B protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AE014298-1557|AAN09282.1| 805|Drosophila melanogaster CG1453-PA,
isoform A protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 139 RHAAKDRTPQSTAALL*SNEIIRNPTISAVTKCLTYKPSVVGNMKN 2
+HAA + Q+TA + + RNPT SA+ LT + ++ GNM N
Sbjct: 68 QHAAPEPKKQATAPM----NLSRNPTQSAIGGNLTSRMTMAGNMLN 109
>AY051627-1|AAK93051.1| 517|Drosophila melanogaster GH27756p
protein.
Length = 517
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 306 RPRFNRASIICGKERALEGGGGDGERAVALYMACKHLPAAVLAAPGERA-GMLAQAAATL 130
RPR + +C K + GGG + + +L K A +L G +A M + L
Sbjct: 5 RPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAK---ALLLQPDGNKAPTMTSLLGERL 61
Query: 129 QKIGHRSRLPH 97
+++ +R PH
Sbjct: 62 RRVSRIARAPH 72
>AE014298-2517|AAF48693.1| 517|Drosophila melanogaster CG4955-PA
protein.
Length = 517
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 306 RPRFNRASIICGKERALEGGGGDGERAVALYMACKHLPAAVLAAPGERA-GMLAQAAATL 130
RPR + +C K + GGG + + +L K A +L G +A M + L
Sbjct: 5 RPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAK---ALLLQPDGNKAPTMTSLLGERL 61
Query: 129 QKIGHRSRLPH 97
+++ +R PH
Sbjct: 62 RRVSRIARAPH 72
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,526,158
Number of Sequences: 53049
Number of extensions: 642909
Number of successful extensions: 2480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2470
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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