Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c21
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   0.58 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   5.4  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     24   5.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   7.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    23   9.4  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 158 NPCAKPACCSNE-YWCYTRHRPTSTLQE---TTTLRRRDCLYQWRRNC 27
           +P  KP+CCS E   C +  +P+   QE     +  +  C  Q +++C
Sbjct: 232 SPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC 279



 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
 Frame = -3

Query: 185 RTHCCCYCWNPCA---KPACCSN 126
           +T CC      C    KP+CCSN
Sbjct: 268 KTSCCSQEKKSCCTSEKPSCCSN 290


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 164 CWNPCAKPACCSNEYWCYTRHR 99
           C+ PC K   C N +  +  HR
Sbjct: 585 CFRPCNKKLSCGNHFCQHMCHR 606


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 151 VQSQPAAAMSTGAIPDIDLPA 89
           V  +PAA  STGAIP ++ PA
Sbjct: 51  VSQEPAAISSTGAIP-LNSPA 70


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  LH*YKQSLLLRVVVSCNVLVGLCLV*HQY 123
           +H  KQ+L  R +++ +  +G C++ H Y
Sbjct: 78  MHLQKQNLSERRMLNASCFLGFCVLAHDY 106


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 93  GRSMSGIAPVLIAAAGWL 146
           GR+++ +  V I+ AGWL
Sbjct: 2   GRTLTSVLVVFISMAGWL 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,696
Number of Sequences: 5004
Number of extensions: 15590
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)