Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c21
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    31   0.18 
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    28   1.6  
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    27   3.8  
11_04_0440 - 17772550-17772567,17772644-17772766,17772954-177732...    26   8.7  
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    26   8.7  

>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = -3

Query: 170 CYCWNPCAKPA--CCSNEYWCYTRHRPTSTLQETTTLRRRD 54
           CY W  C      CC + Y C     P   +Q+ T L  +D
Sbjct: 401 CYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKD 441


>05_03_0653 +
           16617121-16617359,16618892-16618955,16619455-16619485,
           16619577-16619848,16620528-16620633,16620715-16620872,
           16621527-16621714,16621786-16621855,16622814-16622984,
           16624363-16624838,16625625-16625871,16626158-16626490,
           16627329-16627412,16627751-16627843,16627966-16628025,
           16628582-16628680,16628830-16628970,16629207-16629287,
           16629895-16629966,16631160-16631231,16632083-16632176,
           16632257-16632339,16632455-16632532,16632914-16632970,
           16633055-16633132,16633236-16633357,16633463-16633623,
           16634419-16634495,16634570-16634683,16634857-16634958,
           16635368-16635436,16635437-16635577,16635936-16636109,
           16636934-16637063,16637137-16637276,16637369-16637446,
           16637813-16637911,16638408-16638803
          Length = 1749

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 89  TLQETTTLRRRDCLYQWRRNCL 24
           +L   T LR   CL++W  NCL
Sbjct: 630 SLSSATALRAPPCLFRWLENCL 651


>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 245 CYKIS*RWG*SCRYKLSRSFRTHCC 171
           C +++ RWG S R K+ +  +  CC
Sbjct: 165 CQRVNARWGSSERRKVQKHLKLRCC 189


>11_04_0440 -
           17772550-17772567,17772644-17772766,17772954-17773239,
           17773320-17773455,17773787-17773998,17775213-17775574,
           17775670-17775700,17775807-17775868
          Length = 409

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 161 WNPCAKPACCSNEYWCYTRHR-PTSTLQETTTL 66
           W    K     + YWCY +++   STL+  T L
Sbjct: 279 WESSTKVQLVRDVYWCYNKNKNRISTLKNKTAL 311


>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 244 QEFYLELLTIEPF*LTLNI 300
           QEFY +   I+P+  TLNI
Sbjct: 124 QEFYADFCAIDPYHFTLNI 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,871,277
Number of Sequences: 37544
Number of extensions: 110784
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)