Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c21
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   0.83 
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    29   0.83 
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    29   0.83 
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACCS 129
           CR +     R  CCC C   C    CC+
Sbjct: 69  CRPRCCCCCRPKCCCTCCRTCCCTRCCT 96



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACC 132
           CR K   +    CCC     C +P CC
Sbjct: 77  CRPKCCCTCCRTCCCTRCCTCCRPCCC 103


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACCS 129
           CR +     R  CCC C   C    CC+
Sbjct: 71  CRPRCCCCCRPKCCCTCCRTCCCTRCCT 98



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACC 132
           CR K   +    CCC     C +P CC
Sbjct: 79  CRPKCCCTCCRTCCCTRCCTCCRPCCC 105


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACCS 129
           CR +     R  CCC C   C    CC+
Sbjct: 74  CRPRCCCCCRPKCCCTCCRTCCCTRCCT 101



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 212 CRYKLSRSFRTHCCCYCWNPCAKPACC 132
           CR K   +    CCC     C +P CC
Sbjct: 82  CRPKCCCTCCRTCCCTRCCTCCRPCCC 108


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 248 SCYKIS*RWG*SCRYKLSRSFRTHCCCYCWN 156
           SC+ +S R+G  C Y  S ++  + CC+  N
Sbjct: 45  SCFSVSARYGAICHY--SSNYNNYLCCHSQN 73


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 74  TTLRRRDCLYQWRRNCLV 21
           TT+R  DC Y + +NC +
Sbjct: 253 TTIRDPDCKYNYNKNCYI 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,771,321
Number of Sequences: 27780
Number of extensions: 93548
Number of successful extensions: 297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)