Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c20
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    31   0.11 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   1.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   2.4  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.4  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   5.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   5.6  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   9.8  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   9.8  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -1

Query: 388 ELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLISP 209
           +L+V+D+  K    F     + +  +   FFY L    FN   +L  +    N GL ISP
Sbjct: 336 KLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISP 395

Query: 208 AKNLAFGKSGNSYFMFDCQSYGAPVF 131
             ++       SYF F  +  G  ++
Sbjct: 396 LSSV--NPDFRSYFRFVGRVMGLAIY 419


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = -1

Query: 541 KQYLATCVIALVMVQACN-ISAWTSNFLDGIVEIGDKYH------KSCLNKIGNKPNYEL 383
           KQ+LA     L +    N +    S FL  I + G+ Y       + C+ K  N P Y+L
Sbjct: 14  KQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKFLNSPLYQL 73

Query: 382 NVNDLDSKFEDMFPY---SFSVKFENIIF 305
           + N + S F D F +     ++KF  I+F
Sbjct: 74  DENAVLSIFYDCFFFLKEQQTLKFIIIVF 102


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 328 RKMNMETYPRIYYPNRLRSIHNWVYFRFYLN--NFCD 432
           R+MN   YP +YYP  +  +H   Y  FY N  N CD
Sbjct: 499 RRMNSHRYPFLYYP-EVYILHGG-YKSFYENHKNRCD 533


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 472 SNFLDGIVEIGDKYHKSCLNKIGNKPNY 389
           SNFLD  V+    +H +C++K+    NY
Sbjct: 23  SNFLDYAVDKYPDFHFTCIDKLSYVSNY 50


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 268 LSKALVYFFEKSNQGLLISPAKNLAFGKSGNSYFMFDCQSYG 143
           +S A++YF        ++S   N    K    Y  FDCQ+ G
Sbjct: 45  ISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFDCQNDG 86


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 406 GNKPNYELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKAL 254
           GN P++   V +    F D    S S + +++I        PDRF + + L
Sbjct: 366 GNSPSFADGVKEKQVDFRDPVWKSVSRQAKDLISNLLKTNPPDRFTVKQCL 416


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = -1

Query: 163 FDCQSYGAPVF-------CPGRGAAYILKCESLNRLI 74
           F C S G P +        P  G  Y+LKCES  RL+
Sbjct: 213 FICSSTGGPEYEKAKAANIPILGLDYLLKCESEGRLV 249


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 331 SVKFENIIFGFFYNLLPDRFNLS 263
           SV+  +I+FGF+ N++  RF+ S
Sbjct: 223 SVELLDIVFGFWNNIIEKRFSKS 245


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -1

Query: 316 NIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLIS------PAKNLAFGKSGNSYFMFDC 155
           NIIFG  +N  PD F L    +   ++ +  L+ +       ++NL F      +++   
Sbjct: 656 NIIFGEDWNNFPDGFELKVECITLQKRLDTNLIFTNWINDVSSRNLNFDFDSKIFYLTQS 715

Query: 154 QSYGAPV 134
           +S  +P+
Sbjct: 716 ESAESPL 722



 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 352  DMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLISPAK 203
            D++  +F V+F NI + F   +  +  +    +VY  E      L+  AK
Sbjct: 3876 DLWSSAFKVEFSNIKYDFLKIINDESESRMPTIVYLMENCEIDSLLQNAK 3925


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 264 LKLKRSGNKL*KNPNMIFSNLTENEY 341
           LKL R   KL  +P ++F NL  N++
Sbjct: 63  LKLSRYCRKLKTSPIVVFDNLKPNDF 88


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 472 SNFLDGIVEIGDKYHKSCLNKIGNKP 395
           S+F+D I++IG  Y +S   K G+ P
Sbjct: 226 SDFIDVILDIGSIYGRSSQLKPGHSP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,077
Number of Sequences: 5004
Number of extensions: 51723
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)