Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c20
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 436 KYHKSCLNKIGNKPNYELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLL 284
           K+ +  +NK+   P Y  ++        D F   F  +  + + G  +NLL
Sbjct: 71  KFEEDLMNKLPTTPEYNNHLYGSTPDSRDYFSRPFEKRLHSRLPGRNFNLL 121


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 77  KSVKALTFQNVCCSSTRTENGCSVALTVKHKIRI 178
           K  + +TF  +C SS  +EN      ++K  + +
Sbjct: 612 KQNEEITFDYMCQSSKNSENSIMQRASMKENLNV 645


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 352 PRIYYPNRLRSIHNWVYFRF 411
           P  Y P+R RS+   V+ RF
Sbjct: 33  PPDYLPDRYRSVATQVFNRF 52


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 427 CDIYLQSLQFHRE 465
           C IY++S  +H++
Sbjct: 130 CPIYIESFSYHKQ 142


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 ILEFTIQIVYVQFIIGFI 403
           +L FTI  V V  I+GF+
Sbjct: 65  LLVFTIAAVLVGLILGFL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,616
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)