Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c19
         (392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0MTE6 Cluster: Putative uncharacterized protein; n=1; ...    52   3e-06
UniRef50_Q9VVG5 Cluster: CG7630-PA; n=3; Schizophora|Rep: CG7630...    40   0.013
UniRef50_Q7PV37 Cluster: ENSANGP00000011689; n=5; Culicidae|Rep:...    40   0.017
UniRef50_UPI00005179D1 Cluster: PREDICTED: similar to CG7630-PA;...    40   0.023
UniRef50_UPI00015B4B27 Cluster: PREDICTED: hypothetical protein;...    38   0.069
UniRef50_A0BWY8 Cluster: Chromosome undetermined scaffold_133, w...    34   1.1  
UniRef50_O01917 Cluster: Bmp receptor associated protein family ...    33   1.5  
UniRef50_UPI00015B58C8 Cluster: PREDICTED: similar to hepatocyte...    32   3.4  
UniRef50_A2TXB1 Cluster: Ribonuclease P; n=2; Polaribacter|Rep: ...    32   3.4  
UniRef50_Q6B8E9 Cluster: Putative uncharacterized protein; n=3; ...    32   3.4  
UniRef50_Q55N16 Cluster: Putative uncharacterized protein; n=1; ...    32   3.4  
UniRef50_UPI000155CCA8 Cluster: PREDICTED: similar to thrombospo...    32   4.5  
UniRef50_Q6YR29 Cluster: ABC-type dipeptide/oligopeptide system,...    32   4.5  
UniRef50_A5DLA0 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  
UniRef50_Q5JI95 Cluster: Hypothetical membrane protein, conserve...    32   4.5  
UniRef50_Q3AE53 Cluster: Radical SAM domain protein; n=1; Carbox...    31   7.9  

>UniRef50_Q0MTE6 Cluster: Putative uncharacterized protein; n=1;
           Triatoma brasiliensis|Rep: Putative uncharacterized
           protein - Triatoma brasiliensis
          Length = 58

 Score = 52.4 bits (120), Expect = 3e-06
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = -3

Query: 219 MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQP 52
           M++LPVPCG W+  Y   Q+ YN  L IGV +   +      +  +YLN+SPP+ P
Sbjct: 1   MDDLPVPCGSWQTQYNTNQAKYNMQLAIGVIFTVVTIIAAKASGLIYLNYSPPSLP 56


>UniRef50_Q9VVG5 Cluster: CG7630-PA; n=3; Schizophora|Rep: CG7630-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 90

 Score = 40.3 bits (90), Expect = 0.013
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 219 MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPP 61
           MN+LPVP G W+  +    + YN  L+ G+   A + G +  +  ++ N+  P
Sbjct: 34  MNDLPVPAGDWKEQHSQKNAKYNAALITGILVLAGTIGFVKSSGIIHFNYYAP 86


>UniRef50_Q7PV37 Cluster: ENSANGP00000011689; n=5; Culicidae|Rep:
           ENSANGP00000011689 - Anopheles gambiae str. PEST
          Length = 89

 Score = 39.9 bits (89), Expect = 0.017
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 219 MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPP 61
           MN++PVP G +   ++     YN VL  G+  F  +  +   +  +YLN+SPP
Sbjct: 33  MNDMPVPEGDFFEEHRRKNRVYNTVLAAGIVIFGITLTVAKESGLIYLNYSPP 85


>UniRef50_UPI00005179D1 Cluster: PREDICTED: similar to CG7630-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG7630-PA
           - Apis mellifera
          Length = 94

 Score = 39.5 bits (88), Expect = 0.023
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -3

Query: 300 FTANTLRVKICLNKRQYSSKPDRCDAH-MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAW 124
           F + T   K  +     +  PD      M+E+ VPCG W+      ++ YN   V GV  
Sbjct: 6   FQSITRNAKSSMRSYHANKIPDNVKPPTMDEVLVPCGSWKEANAKARTKYNLQFVAGVVI 65

Query: 123 FAFSFGMMIYTESLYLNFSPPAQPGPPSD 37
            A +      T  L+LNF PP      S+
Sbjct: 66  LAATIAYGRITGVLWLNFLPPTPKDKDSE 94


>UniRef50_UPI00015B4B27 Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 91

 Score = 37.9 bits (84), Expect = 0.069
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 219 MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPP 61
           ++E   P GPW+  ++  Q  YN  LVIG+  F  +   +   E L+ N++PP
Sbjct: 35  LDEACHPLGPWKENFEKQQRKYNAHLVIGLTMFIGTCVAINRFELLFFNYAPP 87


>UniRef50_A0BWY8 Cluster: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 219

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 45  VDRVGLVARNLSTNF-PCISSCRMRKQTKQRQSP 143
           +D V LVARNL   F PC S C +     Q QSP
Sbjct: 13  IDEVNLVARNLKNQFEPCNSQCVLPLLNSQSQSP 46


>UniRef50_O01917 Cluster: Bmp receptor associated protein family
           protein 2; n=3; Caenorhabditis|Rep: Bmp receptor
           associated protein family protein 2 - Caenorhabditis
           elegans
          Length = 96

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 210 LPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYT 91
           +PVP   ++  Y ++Q  +N  L +   +FA SF   IYT
Sbjct: 38  MPVPFQSYKKVYGELQGKFNTYLAVSAVFFASSFATAIYT 77


>UniRef50_UPI00015B58C8 Cluster: PREDICTED: similar to hepatocyte
           growth factor-regulated tyrosine kinase substrate (hgs);
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           hepatocyte growth factor-regulated tyrosine kinase
           substrate (hgs) - Nasonia vitripennis
          Length = 876

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 78  LNFSPPAQPGPPSDMVEECEDIEP 7
           +N+SPP  PGP    ++E E+++P
Sbjct: 299 INYSPPPSPGPSPSKIQEEEEVDP 322


>UniRef50_A2TXB1 Cluster: Ribonuclease P; n=2; Polaribacter|Rep:
           Ribonuclease P - Polaribacter dokdonensis MED152
          Length = 132

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -3

Query: 390 QRRIKSKKLVKRYYKFPKMLRATILRAKKTFTANT----LRVKICLNKRQYSSKPDR 232
           Q R+KSKKL+++ YK    ++A  LR     T +T     ++ + + KR +   PDR
Sbjct: 8   QERLKSKKLIEKLYKEGSSVKAFPLRMVFLQTEHTSEYPAQMGVSVAKRNFKKAPDR 64


>UniRef50_Q6B8E9 Cluster: Putative uncharacterized protein; n=3;
           Ixodoidea|Rep: Putative uncharacterized protein - Ixodes
           pacificus (western blacklegged tick)
          Length = 93

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 219 MNELPVPCGPWEPWYKDMQSYYNKVLVIGVAWF 121
           M++LP   GPWE  Y   Q+ +N  L   VA+F
Sbjct: 36  MDDLPKFLGPWEEHYAKRQAKFNMQLAAAVAFF 68


>UniRef50_Q55N16 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 344

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 78  STNFPCISSCRMRKQTKQRQSPEPCYNSFAC---LCTTAPMVHTVLEAHSYGRHIDQALT 248
           +T  PC+S C  +        P P Y++ +    L  T P    +L A S G H+   L+
Sbjct: 165 ATGMPCLSVCYRKTLESSSAFPAPLYDALSAYLYLTQTYPGSSVLLLAESAGGHLALLLS 224

Query: 249 NIVSYLSI 272
             + + S+
Sbjct: 225 RYIRHFSL 232


>UniRef50_UPI000155CCA8 Cluster: PREDICTED: similar to
           thrombospondin, type I, domain containing 7B; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           thrombospondin, type I, domain containing 7B -
           Ornithorhynchus anatinus
          Length = 1439

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 18  PHILQPCRLVDRVGLVARNLSTNFPCISSCRMRKQTKQRQS 140
           P  LQPC L  R   V    S   PC SSCR     + RQS
Sbjct: 767 PETLQPCLLPCRRDCVVTPFSEWTPCPSSCRPGNGPRARQS 807


>UniRef50_Q6YR29 Cluster: ABC-type dipeptide/oligopeptide system,
           permease component; n=2; Candidatus Phytoplasma
           asteris|Rep: ABC-type dipeptide/oligopeptide system,
           permease component - Onion yellows phytoplasma
          Length = 267

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 215 FIWASHRSGFDEYCLLFKHIL--TLNVFAVKVFFALKIVALSILG 343
           FI AS   G +E+C++FKH+L    ++   ++   +  V L+I G
Sbjct: 180 FIKASKALGSNEFCIIFKHVLPHLWSIIITRITIGMATVILTISG 224


>UniRef50_A5DLA0 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 594

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 360 KRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVPCGPWEP 181
           K+++K+     AT++   K    NT  V I       S KP    AH + +P+     + 
Sbjct: 143 KKFHKYLNTTFATVMNTAKVSYVNTYGVVIHWEGSDKSLKPVLLTAHQDTVPIQSDTLDK 202

Query: 180 W-YKDMQSYYNKVLVIG 133
           W +  +  +Y+   V G
Sbjct: 203 WTHPPLSGHYDGEYVWG 219


>UniRef50_Q5JI95 Cluster: Hypothetical membrane protein, conserved;
           n=1; Thermococcus kodakarensis KOD1|Rep: Hypothetical
           membrane protein, conserved - Pyrococcus kodakaraensis
           (Thermococcus kodakaraensis)
          Length = 281

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 141 VIGVAWFAFSFGMMIYTESLYLNF 70
           +IG+AW    FG  + TES+ LNF
Sbjct: 123 IIGLAWMGAPFGQKLVTESMLLNF 146


>UniRef50_Q3AE53 Cluster: Radical SAM domain protein; n=1;
           Carboxydothermus hydrogenoformans Z-2901|Rep: Radical
           SAM domain protein - Carboxydothermus hydrogenoformans
           (strain Z-2901 / DSM 6008)
          Length = 432

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 215 FIWASHRSGFDEYCLLFKHILTLNVFAVKVF 307
           F++  H  G++EY L  K ++ L V AV+VF
Sbjct: 162 FVFMPHVVGYEEYVLSIKKLMQLGVEAVRVF 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,373,089
Number of Sequences: 1657284
Number of extensions: 7469034
Number of successful extensions: 22672
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22663
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)