Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c19
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.8
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 2.4
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 5.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 24 7.3
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 24 9.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 9.7
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 9.7
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 9.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 24 9.7
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.7
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 1.8
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = -3
Query: 372 KKLVKRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVPCG 193
++L+KR PK+L + +K + N LR KI ++ Y S P +N CG
Sbjct: 3253 QQLLKRDDFIPKILNYNL---EKELSIN-LRRKI---EQDYFSNPIFTFDSVNRASKACG 3305
Query: 192 PWEPWYKDMQSYYNKVL 142
P W K + + Y+KVL
Sbjct: 3306 PLLLWIKSICN-YSKVL 3321
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 221 WASHRSGFDEYCLLFKH 271
+ SH SGF EYC LF H
Sbjct: 38 YESH-SGFSEYCTLFGH 53
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -1
Query: 257 DNIRQSLIDVTPI*MSFQYRVDHGSRGTKTCKAIITRFW 141
D + L+ P + Y + GS +TC +I ++W
Sbjct: 91 DKLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYW 129
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 357 RYYKFPKM-LRATILRAKKTFTANTLRVKICLNKRQYSSKPD 235
RY P M L AT K NTLR++ CL + ++P+
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPN 717
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 312 AKKTFTANTLRVKICLNKRQYSSKPD-RCDAHMNELPVPCGPWE 184
AKKT N L + CL QY + R AH+ + P G E
Sbjct: 380 AKKTNLVNDLDNRHCLTPTQYEEAIELRHQAHLKKNFTPKGSIE 423
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.8 bits (49), Expect = 9.7
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = -3
Query: 381 IKSKKLVKRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPV 202
I SK + KR F M R R +K + I +R + S D + + +P
Sbjct: 537 ISSKAISKRGKDFA-MRRDERFRGRKPYRGGP---PIHHGERHFDSGND-WHGNPSTVPP 591
Query: 201 PCGPWEPWYKDMQSYYNKVLVIGVAW 124
P P+ P Y M Y+ V W
Sbjct: 592 PTNPYNPGYPYMDPNYSSGYVSQPPW 617
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 108 RMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVS 260
R+RK+++ + + Y F P + T+L H++ + DQAL ++ S
Sbjct: 60 RLRKRSENVRLTQARYAIFHIFL---PFILTLLLYHNFYNYFDQALADLNS 107
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 180 WYKDMQSYYNKVLVIGVAWFAFSFG 106
W + Y ++ GVA F F FG
Sbjct: 1176 WSYMLDGIYQSLVCFGVALFVFKFG 1200
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 267 LNKRQYSSKPDRCDAHMNELPVPCG 193
LN Y S+P C +N+LP G
Sbjct: 110 LNLETYYSRPSECLMMLNQLPFCLG 134
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 108 RMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVS 260
R+RK+++ + + Y F P + T+L H++ + DQAL ++ S
Sbjct: 60 RLRKRSENVRLTQARYAIFHIFL---PFILTLLLYHNFYNYFDQALADLNS 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,367
Number of Sequences: 5004
Number of extensions: 32194
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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