Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c19
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)                     32   0.14 
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   30   0.58 
SB_8176| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)                  30   0.77 
SB_19900| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)          28   3.1  
SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06)                    27   7.2  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   26   9.5  
SB_20242| Best HMM Match : DOMON (HMM E-Value=0.00097)                 26   9.5  
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)                       26   9.5  

>SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)
          Length = 277

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 45  VDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEP 149
           V R GL  +    +F CIS+C   K  KQR+ PEP
Sbjct: 101 VSRKGLKTKAARVSFDCISNC-SEKAIKQRRLPEP 134


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 354 YYKFPKMLRATILRAKKTFTANTLR--VKICLNKRQYSSKPDRCDAHMNELPVPCG 193
           Y + P +   T +   K+ + N  R   K+CL+   Y  KP RC+ H  ++ + CG
Sbjct: 634 YERTPVLALHTKIARAKSKSENWCRDYEKLCLS---YGRKPARCEMHTKDVQLKCG 686


>SB_8176| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
          Length = 364

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 254 CLLFKHILTLNVFAVKVFFALKIVALSILGNL*YLLTSFFDLMRRC 391
           C+L   +LTL  F  + F+ LK   + +L N+ Y + +FF     C
Sbjct: 221 CMLAALLLTLCWFPTETFWILKQYKVVVLPNVWYWVFNFFAFFNSC 266


>SB_19900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 254 CLLFKHILTLNVFAVKVFFALKIVALSILGNL*YLLTSFFDLMRRC 391
           C+L   +LTL  F  + F+ LK   + +L N+ Y + +FF     C
Sbjct: 221 CMLAALLLTLCWFPTETFWILKQYKVVVLPNVWYWVFNFFAFFNSC 266


>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
          Length = 253

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 84  NFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRH 230
           +F  I+  +    ++  Q P PCY    C      +V T L A  YG H
Sbjct: 194 SFKFIAELQHVMGSQDNQCPIPCYGHAQCRYFVRVLVITRLHAMLYGAH 242


>SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 53  GWAGGEKFKYKLSVYIIMPNEKANQATPITR 145
           G+      KY+L  YI+ PN+  N+ TP+ R
Sbjct: 59  GYPESHNNKYELQSYIL-PNQPINEKTPLHR 88


>SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06)
          Length = 374

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 204 VPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMI 97
           VP  PW P  +D QS Y   L       A+  G+M+
Sbjct: 241 VPGAPWNPRLRDTQSCYKWCLTFQHKQCAWHDGLML 276


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = -3

Query: 225 AHMNELPVPCGPWEPWYKDMQSYYNKVLVIGVA-WFAFSFGMMIYTESLY-----LNFSP 64
           A  +ELP   G W P     +S   K+   G A W  F   ++    S       L F P
Sbjct: 713 ARQHELPQQMGKWVP-LTQTRSQQLKIPDPGSALWCQFRVAVVQQDSSSNFTTSTLTFIP 771

Query: 63  PAQPGPPSD 37
           P +PGP  D
Sbjct: 772 PERPGPVRD 780


>SB_20242| Best HMM Match : DOMON (HMM E-Value=0.00097)
          Length = 417

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 189 WEPWYKDMQSYYNKVLVIGVAWFAFSFGM 103
           W  +++  +++Y K+ V+ + W  F F M
Sbjct: 177 WWAYHEPTETFYFKLEVLALGWVGFGFTM 205


>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
          Length = 366

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 237 DRCDAHMNELPVPCGPW 187
           D C + ++ LP+ CG W
Sbjct: 222 DTCQSQLSNLPITCGGW 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,536
Number of Sequences: 59808
Number of extensions: 244861
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)