Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c18
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.99
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 3.0
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 27 4.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 4.0
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 5.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.3
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.3
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.7 bits (61), Expect = 0.99
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 491 HENTKYRQTLKTLNKTILSNQRKQ-LQMVILYFLKQILK 378
HE K TLK+L K LSN +++ L+ L LKQ+ K
Sbjct: 828 HEELKNLSTLKSLAKEFLSNYKEENLENSTLVQLKQLSK 866
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 489 REHEISSNPKNFEQDNFIESKET-VTNGHPIFPKTDLKNRDSEDIKRNDLAKPIDS 325
+E + +N + +D +E K+T +TN +TD+K ++++ I+ ND + DS
Sbjct: 424 KESKDENNKASLHKD--VEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDS 477
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/110 (20%), Positives = 44/110 (40%)
Frame = -1
Query: 582 ENVTSTTVSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHP 403
+N +S T SL P + + S +I + +++F+++ + P
Sbjct: 190 QNTSSPTNSLRPQLKVQTNGYETPGDINSAKSYKDIQKDFLLKPKNSFVKTSPSPLANGP 249
Query: 402 IFPKTDLKNRDSEDIKRNDLAKPIDSASYRLTIDLKGNIIASNTACHAFI 253
F + DS D + + PI+ S R + + N + A HAF+
Sbjct: 250 SFRSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQPVAYHAFV 299
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 480 EISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSEDIKRNDLAKPIDSAS 319
E+S K E +ES E TNG + P+T +N + + + N A P++ +
Sbjct: 393 ELSEEEKPAESREQLESAEQ-TNG--VKPETQAQNMSASESQANSPAPPVEEGN 443
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 774 DIILDRNEQNTLSVTEQVLLKDKSFATTTGDGLSHKSSKTTP 649
DI+LD N+ + T+ L K KSF D L+ SS P
Sbjct: 204 DILLDTNDDDHFPFTQSPLTKTKSF----NDALTSSSSILKP 241
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -1
Query: 522 RKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSEDIKR 352
++P+P + S++PK E D E G PK+++ + DS KR
Sbjct: 356 KQPSPPVAEHFSNETFSASPKGAETDVKSEGSNNHEQGSFNEPKSNVDSNDSASPKR 412
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 644 EFGVVFDDLCDRPSPVVVANDLSFS 718
+F FD++ P P++ ND++FS
Sbjct: 372 QFSFEFDEVRKLPPPIIAFNDVAFS 396
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 110 IYTI*INITSIPIHDIKTPLQNNDSSVVMNSVIFWSPL*FNA 235
+Y+ +++ + + D+K N S ++ S+ +W L FN+
Sbjct: 1390 MYSCFLDLFLLEVSDLKQTECNAQSDKIIKSITYWQSLLFNS 1431
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 460 KL*TRQFYRIKGNSYKWSSYIS*NRS*KQRFRRYKEK 350
+L TRQ + +KG W Y +S + F KEK
Sbjct: 143 RLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEK 179
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -1
Query: 273 TACHAFIGTLFNDAL-NYKGDQNIT---EFITTELSLFCNGVLMS 151
TA + G L+ ++ N+ G++N + +FIT++L LFC + M+
Sbjct: 86 TAGESLDGYLYGGSIINFIGEKNESSRIDFITSDLVLFCLQIFMA 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,996
Number of Sequences: 5004
Number of extensions: 51323
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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