Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c18
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0822 + 21549257-21550729,21550776-21550877                       29   5.5  
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100...    28   9.6  
07_03_1491 + 26953193-26954326                                         28   9.6  

>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = -1

Query: 426 ETVTNGHPIFPKTDLKNRDSEDIKRNDLAKPIDSASYRLTIDLKGNIIASNTACHAFIGT 247
           ET+TN  P+F    ++N     IKRN     +         D   N+ ++ +    F+  
Sbjct: 118 ETITNNIPLFESKTVENL-CRSIKRNFSLPTLQMKKLFAEKDTDRNVESTKSRLGGFVCN 176

Query: 246 LFNDALNY-KGDQNITEFITTELSLFCNG 163
           L  D L +  G+ +  + +  + SL  +G
Sbjct: 177 LSEDELKHISGNASDFKALEVQKSLLTDG 205


>09_06_0171 -
           21308993-21309671,21309768-21309862,21309944-21310084,
           21310177-21310348,21310445-21310548,21311254-21311370
          Length = 435

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -1

Query: 600 KEHQIDENVTSTTVSLLPMFLDFL-----FHRKPN-PQLTSVTREHEISSNPKNF 454
           KEHQID ++T T   LL    + +     F    N P  T+++  H +  NP N+
Sbjct: 155 KEHQIDWDMTETEQELLKPSEELIQGPNTFVEATNFPVKTTMSAAHAVQINPSNY 209


>07_03_1491 + 26953193-26954326
          Length = 377

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 333 IDSASYRLTIDLKGNIIASNTACHAFIGTLFNDALNYKGD 214
           +D      ++DL G+++A+   CHA     F DA    G+
Sbjct: 200 VDDVRKLWSVDLAGHVVAAPEYCHANFTKYFTDAFWSDGE 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,744
Number of Sequences: 37544
Number of extensions: 262749
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)