Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c18
         (783 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069071-1|AAL39216.1|  496|Drosophila melanogaster GH09052p pro...    32   0.77 
AE014297-372|AAF51943.2|  496|Drosophila melanogaster CG1208-PA ...    32   0.77 
BT023915-1|ABA81849.1|  323|Drosophila melanogaster AT03124p pro...    31   1.3  
AE013599-962|AAF58879.1|  323|Drosophila melanogaster CG12923-PA...    31   1.3  
AY051864-1|AAK93288.1| 1304|Drosophila melanogaster LD36006p pro...    29   9.5  
AE014297-267|AAF52014.2| 1304|Drosophila melanogaster CG2519-PA,...    29   9.5  
AE014297-266|AAS65097.1| 1280|Drosophila melanogaster CG2519-PB,...    29   9.5  

>AY069071-1|AAL39216.1|  496|Drosophila melanogaster GH09052p
           protein.
          Length = 496

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 633 FQLLNSV*FLMIYVIGHLLL*WRMIYL--LVTPALLLIKCFV 752
           FQLL ++  L IYV+G L+  W+ + L  L+ P LLL+  F+
Sbjct: 191 FQLLLTIGILFIYVVGALVS-WKTLSLLCLIIPILLLVGLFI 231


>AE014297-372|AAF51943.2|  496|Drosophila melanogaster CG1208-PA
           protein.
          Length = 496

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 633 FQLLNSV*FLMIYVIGHLLL*WRMIYL--LVTPALLLIKCFV 752
           FQLL ++  L IYV+G L+  W+ + L  L+ P LLL+  F+
Sbjct: 191 FQLLLTIGILFIYVVGALVS-WKTLSLLCLIIPILLLVGLFI 231


>BT023915-1|ABA81849.1|  323|Drosophila melanogaster AT03124p
           protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 396 PKTDLKNRDSEDIKRND-----LAKPIDSASYRLTIDLKGNIIASNTAC 265
           P T L+NR S D  RN      L  P D     +T+ L G  +A  T+C
Sbjct: 220 PNTALRNRRSPDSHRNSEFVLWLVTPSDGLQLNVTLSLYGRDVALRTSC 268


>AE013599-962|AAF58879.1|  323|Drosophila melanogaster CG12923-PA
           protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 396 PKTDLKNRDSEDIKRND-----LAKPIDSASYRLTIDLKGNIIASNTAC 265
           P T L+NR S D  RN      L  P D     +T+ L G  +A  T+C
Sbjct: 220 PNTALRNRRSPDSHRNSEFVLWLVTPSDGLQLNVTLSLYGRDVALRTSC 268


>AY051864-1|AAK93288.1| 1304|Drosophila melanogaster LD36006p
           protein.
          Length = 1304

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 83  AVTRAVWTQIYTI*INITSIPIHDIKTPLQNNDSSVVMNSVIFWSPL 223
           AVT  +W  ++ + ++I  I I+D+  P    +   ++   I W+ L
Sbjct: 724 AVTAPLWIPVFVLLLHIYMILIYDLDAPDNTKNRYCILLEAIVWNLL 770


>AE014297-267|AAF52014.2| 1304|Drosophila melanogaster CG2519-PA,
           isoform A protein.
          Length = 1304

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 83  AVTRAVWTQIYTI*INITSIPIHDIKTPLQNNDSSVVMNSVIFWSPL 223
           AVT  +W  ++ + ++I  I I+D+  P    +   ++   I W+ L
Sbjct: 724 AVTAPLWIPVFVLLLHIYMILIYDLDAPDNTKNRYCILLEAIVWNLL 770


>AE014297-266|AAS65097.1| 1280|Drosophila melanogaster CG2519-PB,
           isoform B protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 83  AVTRAVWTQIYTI*INITSIPIHDIKTPLQNNDSSVVMNSVIFWSPL 223
           AVT  +W  ++ + ++I  I I+D+  P    +   ++   I W+ L
Sbjct: 700 AVTAPLWIPVFVLLLHIYMILIYDLDAPDNTKNRYCILLEAIVWNLL 746


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,625,609
Number of Sequences: 53049
Number of extensions: 514489
Number of successful extensions: 1271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)