Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c18
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-6|CAJ85771.1|  153|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81594-5|CAJ85770.1|  262|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81594-4|CAB04747.1|  282|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF125452-1|AAD12828.1|  311|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z81594-6|CAJ85771.1|  153|Caenorhabditis elegans Hypothetical
           protein T20F10.2c protein.
          Length = 153

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 525 HRKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSED 361
           H++    +T+VT +H  S      ++DN  +S  TVT+      K D KN + E+
Sbjct: 80  HKEKEVTVTTVTTQH--SREEAQVKEDNQAQSTTTVTSTESPVGKLDEKNPEIEE 132


>Z81594-5|CAJ85770.1|  262|Caenorhabditis elegans Hypothetical
           protein T20F10.2b protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 525 HRKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSED 361
           H++    +T+VT +H  S      ++DN  +S  TVT+      K D KN + E+
Sbjct: 189 HKEKEVTVTTVTTQH--SREEAQVKEDNQAQSTTTVTSTESPVGKLDEKNPEIEE 241


>Z81594-4|CAB04747.1|  282|Caenorhabditis elegans Hypothetical
           protein T20F10.2a protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 525 HRKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSED 361
           H++    +T+VT +H  S      ++DN  +S  TVT+      K D KN + E+
Sbjct: 209 HKEKEVTVTTVTTQH--SREEAQVKEDNQAQSTTTVTSTESPVGKLDEKNPEIEE 261


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -1

Query: 522 RKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGHPIFPKTDLKNRDSEDIKRNDL 343
           +K  P+L S+  E ++ + PK ++   F++ K T T G     K  L+    + ++    
Sbjct: 397 KKEEPKLKSLGEESKLETKPKPYD---FLQKKSTKTTGERGRQKPQLQKVPPQKLETGAN 453

Query: 342 AKPIDSASYR-LTIDLKGNIIASNTA 268
            + +   S R L +++   +   N A
Sbjct: 454 VQKVKKMSARGLKVEMYYKLAEKNEA 479


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 540 LDFLFHRKP---NPQLTSVTREHEISSNPKNFEQDNFIESKETVTNGH 406
           L++L H  P    P +TS  R+H    N +N +  NF  +     +GH
Sbjct: 181 LNYLDHLTPFLFPPDITSQYRKHNCRGNNRNSKTSNFRRNDRKNQHGH 228


>AF125452-1|AAD12828.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39F10C.1 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 585 DENVTSTTVSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKETVTN 412
           D  +TS T +L+ + +D L +R+ +   T + REH ++ +     QD    SKE  T+
Sbjct: 249 DVKLTSCTPNLVAIRIDTLDNRRGD---TKLVREHLVTKSYTRTNQDTKTLSKEEKTS 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,961
Number of Sequences: 27780
Number of extensions: 284127
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)