Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c18
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.34 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   9.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 594 HQIDENVTSTTVSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESK 427
           HQI  NVT   +  L  F D+    + +  +T +  +  +S  P +F+  N+I  K
Sbjct: 65  HQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 525 HRKPNPQLTSVTREHEISSNPKNFEQDNFIESKE 424
           HR   P+ T+V +  +    P  F  D+F ++KE
Sbjct: 418 HRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKE 451


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 145 RY*CNINLNSVNLCPNGSCYSIKFIKHRSYKLSVYLSTFRY 23
           RY  N  L SV +         + + HR    +++LST  Y
Sbjct: 167 RYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHLSTGNY 207


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 145 RY*CNINLNSVNLCPNGSCYSIKFIKHRSYKLSVYLSTFRY 23
           RY  N   NSV +    S    K + HR   + + L+T  Y
Sbjct: 167 RYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNY 207


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 489 REHEISSNPKNFEQDNFIESK 427
           R+  I  NP  F+ DNF+  K
Sbjct: 449 RQPHIYPNPDVFDPDNFLPEK 469


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 465 PKNFEQDNFIESKETVTNGHPIFPKTDLKNRDS 367
           P+   ++NF  S+E    G  IF K+D  ++DS
Sbjct: 631 PRPKSENNFA-SQELSREGRRIFHKSDTFHKDS 662


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 465 PKNFEQDNFIESKETVTNGHPIFPKTDLKNRDS 367
           P+   ++NF  S+E    G  IF K+D  ++DS
Sbjct: 599 PRPKSENNFA-SQELSREGRRIFHKSDTFHKDS 630


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 145 RY*CNINLNSVNLCPNGSCYSIKFIKHRSYKLSVYLSTFRY 23
           RY  N   NSV +    S    K + HR   + + L+T  Y
Sbjct: 106 RYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNY 146


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 680 PSPVVVANDLSFSNTCSVTDKVFCSL 757
           P+  VV++ +SF   C V   ++C L
Sbjct: 190 PTYAVVSSSISFYVPCIVMLGIYCRL 215


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 682 WPIT*IIKNYTEFN 641
           W  T +I+NYT FN
Sbjct: 275 WVNTSVIRNYTLFN 288


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 275 LLAMILPFKSIVSLYDALSIGLAK 346
           +L +I+P  +IVS Y A+ + L K
Sbjct: 71  VLGLIVPVFTIVSSYAAIVLTLKK 94


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 424 NSYKWSSYIS*NRS*KQRFRRYKEK 350
           N+YK+S+Y + N      +  Y +K
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKK 344


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 VSKRLLLQHKIYKAPLI*AVSLFVDISL 24
           +SKR   +HK  K+  I AV+   DI+L
Sbjct: 65  ISKRKDKEHKKKKSKTILAVNAEADITL 92


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 471 SNPKNFEQDNFIESKETVTNGH 406
           SNP  + +D   E+ E V  GH
Sbjct: 567 SNPTPWSEDAMTEALEAVRLGH 588


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 VSKRLLLQHKIYKAPLI*AVSLFVDISL 24
           +SKR   +HK  K+  I AV+   DI+L
Sbjct: 65  ISKRKDKEHKKKKSKTILAVNAEADITL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,799
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)