Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c16
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 79 6e-16
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 35 0.010
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 29 0.85
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 3.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 3.4
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 27 3.4
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 6.0
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 7.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 79.0 bits (186), Expect = 6e-16
Identities = 44/135 (32%), Positives = 66/135 (48%)
Frame = -1
Query: 618 SFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTEN 439
+F H+K +FP AP P T GM W+D + E + + R ++ LI E
Sbjct: 42 NFKHIKWIFPNAPSIPVTVNNGMKMPAWYDIYSFADMKREDENGILRSAGQLHELIDAEL 101
Query: 438 DAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTY 259
GIPSDRI++GGFS G ++ + G + ++LAG+ S FL S L
Sbjct: 102 ALGIPSDRILIGGFSQGCMVSLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEI- 160
Query: 258 PPLLQIHGNQDDLVP 214
P+L + +D +VP
Sbjct: 161 -PILLTYMTEDPIVP 174
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 35.1 bits (77), Expect = 0.010
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = -1
Query: 582 PLQPYTPAGGMM--SNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRII 409
PL P G M +V FD+ ++ + D ++ T + NLI GI S RI
Sbjct: 64 PLDFENPGGNWMWGEDVHFDQNG---ELQSEAD-FSKSFTMISNLIGNLLSYGILSSRIF 119
Query: 408 VGGFSMGGALAFHTGYRWDRK--LAGVFAFSSFL 313
GF G +A ++ Y+ K L G+F+F L
Sbjct: 120 FFGFGQGAMVALYSCYKLSTKYQLGGIFSFGGTL 153
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 699 KRENKNITFGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 562
+R KN T S+ D + + ++ FP + L T PL+ ++P
Sbjct: 669 ERRYKNFTTTSSSFDTLQGIDTEAMEYEFPKIPPLVFTPPLEEFSP 714
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 581 GAVGNKTFTCGKENCSTINLTHSLISAPVDPN 676
G+ + F K+NC T LT + + P D N
Sbjct: 388 GSAKSSNFCSSKDNCLTNRLTLNCLDTPSDEN 419
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 333 TPQPVF-YPICSQCEKPVH 386
+PQ F Y IC CE+P+H
Sbjct: 126 SPQSNFMYAICDHCEQPIH 144
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 450 KTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELK 280
KT +PS ++ GG GG LAF K FS L + S VY LK
Sbjct: 142 KTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAP---TFSEGLRWGSEVYHTLK 195
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 420 DRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQI 241
D+ + G SMG A T +W K+ + NS Y +L + G + ++QI
Sbjct: 87 DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVD-----NSPWYQDLPRDYGAYFRKMIQI 141
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 351 RKLAGVFAFSSFLNYNSAVYDE 286
RK +F ++LN+N+ +Y+E
Sbjct: 326 RKKGAIFPIHAYLNFNAKLYEE 347
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 322 AECKHPSQFSIPSVASVKSQCTSHGKSTNYNPITGYSSIIFSFYKILYFSFNS 480
AE PS+ + PS++ Q +S +++ NP SS + SF + SF +
Sbjct: 3792 AELPTPSRMTSPSLSETIPQSSSISEASTSNP-NILSSTVLSFDSTITNSFTT 3843
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,779
Number of Sequences: 5004
Number of extensions: 69023
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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