Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c16
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 82 4e-16
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 70 2e-12
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 69 3e-12
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 68 6e-12
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 66 3e-11
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 61 1e-09
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 57 1e-08
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 33 0.22
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 33 0.29
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 32 0.38
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 31 0.89
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 30 2.0
06_02_0360 - 15157622-15157668,15157896-15157989,15158098-151581... 29 2.7
04_04_1435 + 33585508-33586490,33586646-33586664 29 2.7
11_01_0282 + 2093451-2094668 29 3.6
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 29 3.6
06_03_0449 + 20907491-20910146,20910313-20910782 29 3.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 4.7
08_02_1370 + 26457276-26457482,26457600-26457721,26458240-264582... 28 8.3
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 28 8.3
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.3
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 82.2 bits (194), Expect = 4e-16
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 17/216 (7%)
Frame = -1
Query: 672 GSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKL 493
G GA W +L+ E P++K + PTAP +P GG S WFD A+++ D P+ +
Sbjct: 43 GDNGAS---WSQLL-ETLPLPNIKWICPTAPTRPVAVFGGFPSTAWFDVADLSEDAPDDV 98
Query: 492 DSLARIETEVKNLIKTENDAGIPSD-RIIVGGFSMGGALAFHT-----------GYRWDR 349
+ L V NL+ TE P+D ++ VGGFSMG A A ++ G +
Sbjct: 99 EGLDASAAHVANLLSTE-----PADIKLGVGGFSMGAATALYSATCYAHGKYGNGNPYPV 153
Query: 348 KLAGVFAFSSFLNYNSAVYDELKNNTGVTYP----PLLQIHGNQDDLVPLKWGEETYQKL 181
L+ S +L ++ ++++++ PLL HG DD+V K GE++ L
Sbjct: 154 NLSVSVGLSGWLPCARSLKNKIESSQEAAQKASSIPLLLCHGKADDVVLYKHGEKSADAL 213
Query: 180 KSLGIQGSFFVQ-ERLGHSLNRRGIKIIKDWIDEKL 76
K+ G F RLGH + + W+ L
Sbjct: 214 KTTGFSNVVFKSYNRLGHYTVPEEMDEVCKWLTANL 249
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 70.1 bits (164), Expect = 2e-12
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Frame = -1
Query: 492 DSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFL 313
+ + R V +I E AG + V G S GGAL + + L G FS FL
Sbjct: 430 EDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTLGGCAVFSGFL 489
Query: 312 NYNSA----VYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQ 145
+NS+ V + K P+L IHG L+P+K G + + L+ LG+ F V
Sbjct: 490 PFNSSFAVRVTAQAKKLQCGLQTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCEFKVY 549
Query: 144 ERLGHSLNRRGIKIIKDWIDEKLPNS 67
+RLGHSL + + W+++ L S
Sbjct: 550 DRLGHSLEYYELDYCQRWVEKILHRS 575
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 69.3 bits (162), Expect = 3e-12
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Frame = -1
Query: 672 GSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKL 493
G GA W +L+ + P++K + PTAP +P GG WFD + + D + +
Sbjct: 75 GDNGAS---WSQLL-DSLPLPNIKWICPTAPTRPVAAFGGFPCTAWFDVEDTSVDGRDDI 130
Query: 492 DSLARIETEVKNLIKTENDAGIPSD-RIIVGGFSMGGALAFHT-----------GYRWDR 349
+ L V NL+ +E PSD ++ +GGFSMG A A H+ G +
Sbjct: 131 EGLDASAAHVANLLSSE-----PSDVKLGIGGFSMGAAAALHSAACYAHGRFTNGVAYPV 185
Query: 348 KLAGVFAFSSFLNYNSAVYDEL-KNNTGVTYP---PLLQIHGNQDDLVPLKWGEETYQKL 181
L+ V S +L + + ++ + T + P+L HG D++V + GE++ L
Sbjct: 186 TLSAVIGLSGWLPCSRTLKSKMDSSQTALRRAGALPILLSHGRADEVVTYRNGEKSADFL 245
Query: 180 KSLGIQG-SFFVQERLGHSLNRRGIKIIKDWIDEKL 76
+ G Q +F LGH + + W+ +L
Sbjct: 246 RGSGFQYLNFKPYNGLGHYTIPEEMDDVCKWLSSRL 281
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 68.1 bits (159), Expect = 6e-12
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Frame = -1
Query: 615 FPHVKVLFPTAPLQPYTPAGGMMSNVWFD--RANITPDVPEKLDSLARIETEVKNLIKTE 442
F K FP+AP P + G + WFD ++ P+ + + V +I E
Sbjct: 79 FRLTKWAFPSAPNSPVSCNHGAVMPSWFDIHELPMSSGSPQDDSGVLKAVENVHAMIDKE 138
Query: 441 NDAGIPSDRIIVGGFSMGG-------ALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDEL 283
GIP + I V GFS GG AL + + + L G FS +L + S+V + +
Sbjct: 139 VADGIPPENIFVCGFSQGGRTSALHCALTLASVLLYPKTLGGGAVFSGWLPFGSSVTERI 198
Query: 282 KNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKI 103
T P+L HG D++V + G+ L++ G F LGHS+++ +
Sbjct: 199 SPEARKT--PILWSHGIADNVVLFEAGQAGPPFLQNAGFSCEFKAYPGLGHSISKEELYS 256
Query: 102 IKDWIDEKLPNS 67
++ WI L S
Sbjct: 257 LESWIKNHLKAS 268
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 66.1 bits (154), Expect = 3e-11
Identities = 53/202 (26%), Positives = 79/202 (39%), Gaps = 3/202 (1%)
Frame = -1
Query: 672 GSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWF--DRANITPDVPE 499
G TG + + V V+ FPTAP GG + WF IT
Sbjct: 17 GQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVPITARTAR 76
Query: 498 KLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSS 319
+ + V ++ E AG I V G S GGALA + + L G FS
Sbjct: 77 DEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLGGCVVFSG 136
Query: 318 FLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFV-QE 142
L + + + + T P+L HG D +V + G L+ +G+ F V
Sbjct: 137 SLPLSKTFAESIPSEARKT--PVLWFHGMADGVVLFEAGHAGCAFLQEIGMHCEFKVAYP 194
Query: 141 RLGHSLNRRGIKIIKDWIDEKL 76
LGH+L ++ + WI ++L
Sbjct: 195 ALGHTLVDEELQYFRQWIKDRL 216
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = -1
Query: 672 GSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKL 493
G GA W +L+ + S P++K + PTA +P T GG WFD +I+ D + +
Sbjct: 42 GDNGAS---WSQLL-DSLSLPNIKWICPTAATRPVTAFGGFPCTAWFDVEDISVDGRDDI 97
Query: 492 DSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHT 367
+ L + NL+ +E P ++ +GGFSMG A A H+
Sbjct: 98 EGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAAAALHS 135
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 57.2 bits (132), Expect = 1e-08
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Frame = -1
Query: 672 GSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKL 493
G GA W +L+ + S P++K + PTA QP T GG WFD + + D + +
Sbjct: 42 GDNGAS---WSQLL-DSLSLPNIKWICPTAATQPVTAFGGFPCTAWFDVEDTSVDGRDDI 97
Query: 492 DSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALA-----------FHTGYRWDRK 346
+ L + NL+ +E P ++ +GGFSMG A + F +G +
Sbjct: 98 EGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAAASLYSAACYAHGKFASGIPYPIT 153
Query: 345 LAGVFAFSSFLNYNSAVYDELKNN----TGVTYPPLLQIHGNQDDLVPLKWGE 199
L+ V + S +L + + +++++ P+L HG D++V + E
Sbjct: 154 LSAVISLSGWLPCSRTLRGKMESSHIAARRAASLPILLSHGRADEVVSYRNAE 206
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 33.1 bits (72), Expect = 0.22
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Frame = -1
Query: 504 PEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAF 325
P + ++ A IE + L E + GI + +I+ G S+G H R R L GV
Sbjct: 119 PSEENTYADIEAVYQCL---ETEYGISQEDLILYGQSVGSGPTLHLASRLPR-LRGVVLH 174
Query: 324 SSFLNYNSAV--------YDELKNNTGV--TYPPLLQIHGNQDDLVPLKWGEETYQ 187
S+ L+ V +D KN + P+L IHG DD+V G E ++
Sbjct: 175 SAILSGLRVVCHVNFTFCFDIYKNVKKIKKVKSPVLVIHGTDDDVVNWSHGNELWK 230
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = -1
Query: 432 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVY--------DELKN 277
GI + +I+ G S+G H R + KL GV S+ L+ +Y D KN
Sbjct: 138 GIEPEDLILYGQSVGSGPTLHLASRLE-KLRGVVLHSAILSGIRVLYPVKVTLWFDIFKN 196
Query: 276 NTGVTYP--PLLQIHGNQDDLVPLKWGEETYQKLK 178
+ P+L IHG DD+V G+ ++ K
Sbjct: 197 IDKIKQVDCPVLVIHGTADDIVDFSHGKRLWELAK 231
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 32.3 bits (70), Expect = 0.38
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 467 SVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTFTCGKENC--STINL 640
S + + SS++ TS ++ N+ L GC G +FTC +NC ST N
Sbjct: 153 SPPVFVSNSSYTVTSFTLVFEFNKGTLQNLYWKANGCSACSGQPSFTCVDQNCAISTANC 212
Query: 641 THSLISAPVDPNVIFLFS 694
T S P + FS
Sbjct: 213 TGKGGSVDCSPGIQLAFS 230
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 31.1 bits (67), Expect = 0.89
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +2
Query: 404 PTIILSLGIPASFSVFIRFFTSVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKG 583
P II A+F++ +RF T +++A S G GV+L ++ I+ A G
Sbjct: 538 PKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVA-----IVQAALPQGIVP 592
Query: 584 AVGNKTFTCGKENCSTINLTHSLISAPV 667
V K + C + ST + LI+ P+
Sbjct: 593 FVFAKEYNCHPQILSTAVIFGMLIALPI 620
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 29.9 bits (64), Expect = 2.0
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Frame = -1
Query: 504 PEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAF 325
P + ++ A IE N +K + G+ + II+ G S+G R L GV
Sbjct: 138 PTECNTYADIEAAY-NCLKEKY--GVADEDIILYGQSVGSGPTIDLASRLPN-LRGVVLH 193
Query: 324 SSFLNYNSAVY--------DELKN--NTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLK 178
S L+ +Y D KN G+ P+L IHG DD+V G++ ++ K
Sbjct: 194 SPILSGLRVLYPVKRTYWFDIYKNIDKIGLVNCPVLVIHGTSDDVVDCSHGKQLWELCK 252
>06_02_0360 -
15157622-15157668,15157896-15157989,15158098-15158189,
15158719-15158953
Length = 155
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = -1
Query: 369 TGYRWDRKLAGVFAFSSFLNYNSA-VYDELKNNTGVTYPP----LLQI-HGNQDDLVPLK 208
TG D G+ S F +Y +A + E+KN Y +++I HG+ + LVPL
Sbjct: 51 TGKTKDMNELGIIYRSFFHDYCAAKLTREMKNKLNEKYVDDELAVMRISHGSHNGLVPLN 110
Query: 207 WGEETYQKLKSLGIQGSFFVQERLGHSLNRRG 112
+G ET G GS R + L+ G
Sbjct: 111 FG-ETRLLQSGQGFDGSMCQVSRFNYFLSYHG 141
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -1
Query: 204 GEETYQKLKSLGIQGSFFV-QERLGHSLN 121
G T+ K+KSLG + SFF+ Q+R+G S +
Sbjct: 277 GSATWMKVKSLGGRRSFFIGQDRIGASFD 305
>11_01_0282 + 2093451-2094668
Length = 405
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 480 RIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGY 361
++ EV+ ++ G+P I V G S+G ALA T Y
Sbjct: 227 QVRGEVQRIVSEYGGEGMPPLSITVTGHSLGAALAVLTAY 266
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 428 IPASFSVFIRFFTSVSI-LANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTF 604
IP +F V + F S+ LA ESS + LS + II VY C G G +
Sbjct: 216 IPFTFGVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIII---VYACFGVCGYLAY 272
Query: 605 TCGKENCSTINLTHSLISAPV 667
++ T+NL +S SA V
Sbjct: 273 GEATKDIITLNLPNSWSSAAV 293
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 594 FPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARI 475
F AP+ P ++ +W + NIT ++PE SL +
Sbjct: 214 FAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTEL 253
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -1
Query: 513 PDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGV 334
P + E + SL I N I+ +N+ G S I+ GFS G A FH R R G
Sbjct: 1814 PFMKESIGSLP-INRHSSNSIQ-QNEVGSSSHESILHGFSDGQAKLFHEMQR--RVKLGK 1869
Query: 333 FAFSSFLNYNSAVYDELKNNTG 268
LN+ + + D L N+G
Sbjct: 1870 LPIEMNLNH-TKLSDPLAENSG 1890
>08_02_1370 +
26457276-26457482,26457600-26457721,26458240-26458293,
26458390-26458431,26458553-26458667,26458746-26458909,
26459280-26459349,26459897-26459995,26460277-26460354
Length = 316
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 337 PSQFSIPSVASVKSQCTSHGKSTNY 411
P F +P+ + QC HG ST Y
Sbjct: 180 PYTFILPATKELPKQCIRHGSSTRY 204
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 14 NIKNHYGNHKIL*TLVCYELGNFSSIQSLIILMPRLFNECPNLS*TKKL 160
N+KNH + L T CY GN+S ++ I L F NL K++
Sbjct: 595 NLKNHAQVYVDLST--CYSKGNYSELEEYIQLNAEKFQSDNNLGLVKQV 641
>02_05_0822 + 32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -1
Query: 324 SSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQ 145
++ + AV + L+ G PL +D + P K+G + QKL G + V
Sbjct: 953 NAIADIEKAVIESLEKQYGDVLAPL------KDCIAPKKFGLKYVQKLTKRNSVGPYTVP 1006
Query: 144 ERLGHSLN--RRGIKIIKDWIDEKL 76
E LG LN +R + +++ I+ L
Sbjct: 1007 EDLGILLNTMKRLLDVLRPRIESHL 1031
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,212
Number of Sequences: 37544
Number of extensions: 419590
Number of successful extensions: 1179
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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