Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c16
(702 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY102661-1|AAM27490.1| 235|Drosophila melanogaster GH11067p pro... 204 1e-52
AE014297-1212|AAF54564.1| 235|Drosophila melanogaster CG6567-PA... 204 1e-52
AY094672-1|AAM11025.1| 216|Drosophila melanogaster GH04560p pro... 106 3e-23
AE014296-1993|AAS65031.1| 216|Drosophila melanogaster CG18815-P... 106 3e-23
AE014296-1992|AAS65030.1| 216|Drosophila melanogaster CG18815-P... 106 3e-23
AE014296-1991|AAG22322.1| 216|Drosophila melanogaster CG18815-P... 106 3e-23
AE014296-2284|AAF49812.1| 289|Drosophila melanogaster CG10116-P... 30 2.6
U71002-1|AAC47315.1| 1526|Drosophila melanogaster Frazzled protein. 29 8.1
U71001-1|AAC47314.1| 1375|Drosophila melanogaster Frazzled protein. 29 8.1
AE013599-1516|AAM68622.1| 1375|Drosophila melanogaster CG8581-PB... 29 8.1
AE013599-1515|AAF58493.1| 1526|Drosophila melanogaster CG8581-PA... 29 8.1
>AY102661-1|AAM27490.1| 235|Drosophila melanogaster GH11067p
protein.
Length = 235
Score = 204 bits (497), Expect = 1e-52
Identities = 96/201 (47%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Frame = -1
Query: 672 GSTGADIKEWVRLMV-EQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEK 496
G TG ++ EWVR ++ +PH+K+++PTAP Q YTP G +SNVWFDR ++ E
Sbjct: 25 GDTGPNVLEWVRFLIGRNLEYPHIKIIYPTAPKQKYTPLDGELSNVWFDRKSVNIAASES 84
Query: 495 LDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSF 316
S+++ V LI E +GIP +RI+VGGFSMGGALA HTGY R LAGVFA SSF
Sbjct: 85 KKSMSQCYDAVNQLIDEEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSF 144
Query: 315 LNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERL 136
LN S VYD L N ++P L HG +D LVP WG ET++ L LG++G+F
Sbjct: 145 LNRGSVVYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHPLRNT 204
Query: 135 GHSLNRRGIKIIKDWIDEKLP 73
H L I ++ WI EKLP
Sbjct: 205 LHELKTASITDLQQWIYEKLP 225
>AE014297-1212|AAF54564.1| 235|Drosophila melanogaster CG6567-PA
protein.
Length = 235
Score = 204 bits (497), Expect = 1e-52
Identities = 96/201 (47%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Frame = -1
Query: 672 GSTGADIKEWVRLMV-EQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEK 496
G TG ++ EWVR ++ +PH+K+++PTAP Q YTP G +SNVWFDR ++ E
Sbjct: 25 GDTGPNVLEWVRFLIGRNLEYPHIKIIYPTAPKQKYTPLDGELSNVWFDRKSVNIAASES 84
Query: 495 LDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSF 316
S+++ V LI E +GIP +RI+VGGFSMGGALA HTGY R LAGVFA SSF
Sbjct: 85 KKSMSQCYDAVNQLIDEEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSF 144
Query: 315 LNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERL 136
LN S VYD L N ++P L HG +D LVP WG ET++ L LG++G+F
Sbjct: 145 LNRGSVVYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHPLRNT 204
Query: 135 GHSLNRRGIKIIKDWIDEKLP 73
H L I ++ WI EKLP
Sbjct: 205 LHELKTASITDLQQWIYEKLP 225
>AY094672-1|AAM11025.1| 216|Drosophila melanogaster GH04560p
protein.
Length = 216
Score = 106 bits (254), Expect = 3e-23
Identities = 62/177 (35%), Positives = 91/177 (51%)
Frame = -1
Query: 612 PHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDA 433
P +KV+ PTAP QP + G WFD + PE + V +I+ E A
Sbjct: 40 PFMKVICPTAPTQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISA 99
Query: 432 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPP 253
GIP++RI++GGFS GGALA ++ +D+ LAGV A S +L + N+ V P
Sbjct: 100 GIPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKVNSDDV---P 156
Query: 252 LLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDE 82
+ Q HG+ D +VP K+G+ + LKS +F L HS + + +KD I +
Sbjct: 157 IFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1993|AAS65031.1| 216|Drosophila melanogaster CG18815-PC,
isoform C protein.
Length = 216
Score = 106 bits (254), Expect = 3e-23
Identities = 62/177 (35%), Positives = 91/177 (51%)
Frame = -1
Query: 612 PHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDA 433
P +KV+ PTAP QP + G WFD + PE + V +I+ E A
Sbjct: 40 PFMKVICPTAPTQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISA 99
Query: 432 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPP 253
GIP++RI++GGFS GGALA ++ +D+ LAGV A S +L + N+ V P
Sbjct: 100 GIPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKVNSDDV---P 156
Query: 252 LLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDE 82
+ Q HG+ D +VP K+G+ + LKS +F L HS + + +KD I +
Sbjct: 157 IFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1992|AAS65030.1| 216|Drosophila melanogaster CG18815-PB,
isoform B protein.
Length = 216
Score = 106 bits (254), Expect = 3e-23
Identities = 62/177 (35%), Positives = 91/177 (51%)
Frame = -1
Query: 612 PHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDA 433
P +KV+ PTAP QP + G WFD + PE + V +I+ E A
Sbjct: 40 PFMKVICPTAPTQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISA 99
Query: 432 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPP 253
GIP++RI++GGFS GGALA ++ +D+ LAGV A S +L + N+ V P
Sbjct: 100 GIPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKVNSDDV---P 156
Query: 252 LLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDE 82
+ Q HG+ D +VP K+G+ + LKS +F L HS + + +KD I +
Sbjct: 157 IFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1991|AAG22322.1| 216|Drosophila melanogaster CG18815-PA,
isoform A protein.
Length = 216
Score = 106 bits (254), Expect = 3e-23
Identities = 62/177 (35%), Positives = 91/177 (51%)
Frame = -1
Query: 612 PHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDA 433
P +KV+ PTAP QP + G WFD + PE + V +I+ E A
Sbjct: 40 PFMKVICPTAPTQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISA 99
Query: 432 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPP 253
GIP++RI++GGFS GGALA ++ +D+ LAGV A S +L + N+ V P
Sbjct: 100 GIPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKVNSDDV---P 156
Query: 252 LLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDE 82
+ Q HG+ D +VP K+G+ + LKS +F L HS + + +KD I +
Sbjct: 157 IFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-2284|AAF49812.1| 289|Drosophila melanogaster CG10116-PA
protein.
Length = 289
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 519 ITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALA 376
I+ D+ E D I++ +I N +P DRI+V GF+ G LA
Sbjct: 88 ISVDLSEANDETEIIDSVASLVIVLHNQFDMPLDRILVVGFAEGAHLA 135
>U71002-1|AAC47315.1| 1526|Drosophila melanogaster Frazzled protein.
Length = 1526
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 282 KNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGS 157
KNN GV PP L IH +Q +L + G T + S G S
Sbjct: 1266 KNNVGVPKPPDLWIHHDQMELKNIDKGLHTVTPVCSDGASSS 1307
>U71001-1|AAC47314.1| 1375|Drosophila melanogaster Frazzled protein.
Length = 1375
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 282 KNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGS 157
KNN GV PP L IH +Q +L + G T + S G S
Sbjct: 1115 KNNVGVPKPPDLWIHHDQMELKNIDKGLHTVTPVCSDGASSS 1156
>AE013599-1516|AAM68622.1| 1375|Drosophila melanogaster CG8581-PB,
isoform B protein.
Length = 1375
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 282 KNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGS 157
KNN GV PP L IH +Q +L + G T + S G S
Sbjct: 1115 KNNVGVPKPPDLWIHHDQMELKNIDKGLHTVTPVCSDGASSS 1156
>AE013599-1515|AAF58493.1| 1526|Drosophila melanogaster CG8581-PA,
isoform A protein.
Length = 1526
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 282 KNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGS 157
KNN GV PP L IH +Q +L + G T + S G S
Sbjct: 1266 KNNVGVPKPPDLWIHHDQMELKNIDKGLHTVTPVCSDGASSS 1307
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,741,085
Number of Sequences: 53049
Number of extensions: 711841
Number of successful extensions: 1712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1708
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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