Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c16
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 95 6e-20
AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein ... 92 4e-19
AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein ... 92 4e-19
U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl pept... 33 0.20
Z92829-6|CAB07346.1| 214|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical ... 29 2.4
AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical ... 29 2.4
Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine re... 29 4.3
U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical pr... 28 5.6
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 94.7 bits (225), Expect = 6e-20
Identities = 56/186 (30%), Positives = 84/186 (45%)
Frame = -1
Query: 645 WVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETE 466
W + ++K + P + +P T GM WFD + P+ E + R
Sbjct: 35 WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRATQY 94
Query: 465 VKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDE 286
V LI E AGIP+ RI VGGFSMGGALA + G + +KL G+ SSF +
Sbjct: 95 VHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSFFLQRTKFPGS 154
Query: 285 LKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIK 106
N P+ HG D LVPL++G+ + Q +K + + HS ++
Sbjct: 155 FTANNAT---PIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMR 211
Query: 105 IIKDWI 88
+K ++
Sbjct: 212 DVKTFL 217
>AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 91.9 bits (218), Expect = 4e-19
Identities = 57/174 (32%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Frame = -1
Query: 645 WVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETE 466
W + ++K + P + +P T GM WFD + P+ E + R
Sbjct: 35 WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRATQY 94
Query: 465 VKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSS-FLNYNSAVYD 289
V LI E AGIP+ RI VGGFSMGGALA + G + +KL G+ SS FL
Sbjct: 95 VHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSXFLQRTKFPGS 154
Query: 288 ELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHS 127
NN P+ HG D LVPL++G+ + Q +K + + HS
Sbjct: 155 FTANNA----TPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHS 204
>AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 91.9 bits (218), Expect = 4e-19
Identities = 57/174 (32%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Frame = -1
Query: 645 WVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETE 466
W + ++K + P + +P T GM WFD + P+ E + R
Sbjct: 35 WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRATQY 94
Query: 465 VKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSS-FLNYNSAVYD 289
V LI E AGIP+ RI VGGFSMGGALA + G + +KL G+ SS FL
Sbjct: 95 VHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSXFLQRTKFPGS 154
Query: 288 ELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHS 127
NN P+ HG D LVPL++G+ + Q +K + + HS
Sbjct: 155 FTANNA----TPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHS 204
>U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 4 protein.
Length = 629
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -1
Query: 255 PLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKD 94
P+ +HG +D +VP+ Y+K+++ G+ + + + GH R G ++IK+
Sbjct: 548 PIAFLHGREDTVVPMSQSITMYEKIRASGVTTALMLFDGEGHGF-RNG-QVIKE 599
>Z92829-6|CAB07346.1| 214|Caenorhabditis elegans Hypothetical
protein F10A3.7 protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 418 ITGYSSIIFSFYKILYFSFNSG**VQFFRNIWCNISSIKPNIAHHTT 558
I+ S +F YK L FSF+S V F N WC I +I +++
Sbjct: 32 ISKMSKQMFGNYKYLMFSFSSFTIVYSFVNFWCKPVVINVHITENSS 78
>Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical
protein F01D5.8 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -1
Query: 426 PSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFA---FSSFLNYNSAVYDELKNNTGVTYP 256
P +I+V G+S+G A +LAGV F+S L S+ D+ ++
Sbjct: 148 PDKKIVVMGYSIGTTAAVDLAATNPDRLAGVVLIAPFTSGLRLFSSKPDKPDTCWADSFK 207
Query: 255 PLLQI----------HGNQDDLVPLKWGEETYQKLKS 175
+I HG+ D+++PL G Y+KLK+
Sbjct: 208 SFDKINNIDTRVLICHGDVDEVIPLSHGLALYEKLKN 244
>AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical
protein F59E12.6b protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 285 LKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIK 106
L N G+ PP + GN++D + +Q+ + G FF + +L + + K
Sbjct: 385 LDPNFGIGCPPKCDVVGNENDTISTH-SLPRFQRFRRRRFLGGFFKKRKL---IRKTEAK 440
Query: 105 IIKDWIDEKL 76
I W D K+
Sbjct: 441 TIVPWSDAKV 450
>AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical
protein F59E12.6a protein.
Length = 499
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 285 LKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIK 106
L N G+ PP + GN++D + +Q+ + G FF + +L + + K
Sbjct: 432 LDPNFGIGCPPKCDVVGNENDTISTH-SLPRFQRFRRRRFLGGFFKKRKL---IRKTEAK 487
Query: 105 IIKDWIDEKL 76
I W D K+
Sbjct: 488 TIVPWSDAKV 497
>Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical
protein B0464.9 protein.
Length = 364
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 474 ETEVKNLIKT-ENDAGIPSDRIIVGGFSMGGALAFHT 367
ET++K++ +N G + + G SMGGALA HT
Sbjct: 137 ETQIKDIGAIFKNIFGEDDSPVCIVGHSMGGALAIHT 173
>AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein31 protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 246 AARVDMLHLCYFSIHHKRLNYNLRRS*MQTPQPVFYPIC 362
+ ++++L +C+F HH + LR + + P P+ Y +C
Sbjct: 104 SGQIEVLTICFFRKHHAIM--KLRPTTDKVPYPIIYVLC 140
>U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical
protein ZK180.3b protein.
Length = 285
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 138 IFLERKNFPEFQDFST-SDMFPLPISGVLNRPGYH 239
I++ K+ PE + FST SD+FP G+ +R H
Sbjct: 47 IYIRNKSIPELEQFSTFSDLFPKFSEGI-DRDSIH 80
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 138 IFLERKNFPEFQDFST-SDMFPLPISGVLNRPGYH 239
I++ K+ PE + FST SD+FP G+ +R H
Sbjct: 195 IYIRNKSIPELEQFSTFSDLFPKFSEGI-DRDSIH 228
>Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical
protein H13N06.6 protein.
Length = 585
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 KHIRS*KVLEFREVFSFKKDWGTR*IDEALRLLKIGSMK-SCLIHN 63
+H K ++ +++S KDWG +E +L +G+M +CL N
Sbjct: 493 RHGMDGKRMQISDMYSNVKDWGNGVDEEFYNVLNVGNMNMNCLKSN 538
>AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical
protein T28C12.6 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 316 EGAECKHPSQFSIPSVASVKSQC 384
+G+ C +PSQ S PSV S+ C
Sbjct: 214 QGSCCTNPSQASCPSVTSMNINC 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,309
Number of Sequences: 27780
Number of extensions: 382885
Number of successful extensions: 1223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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